Variant report

Variant	rs11582280
Chromosome Location	chr1:159442736-159442737
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 5 )
Associated
traits (count: 3 )

rSNPs within LD-proxies of this variant (count:4)

rs_ID	r²[population]
rs11588375	1.00[CHB][hapmap];1.00[CHD][hapmap];0.81[GIH][hapmap];1.00[ASN][1000 genomes]
rs11808498	1.00[ASW][hapmap];1.00[CHB][hapmap];0.96[TSI][hapmap]
rs72715681	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72715685	1.00[AFR][1000 genomes];0.84[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv432975	chr1:159431927-159461927	Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

mRNA abundance (count:3)

SNP	Gene	Cis/trans	Tissue	Source
rs11582280	FDPS	cis	parietal	SCAN
rs11582280	MICAL2	trans	cerebellum	SCAN
rs11582280	OR10Z1	cis	parietal	SCAN

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:159438200-159444600	Enhancers	HUVEC	blood vessel
2	chr1:159439600-159445400	Enhancers	Muscle Satellite Cultured Cells	--
3	chr1:159440400-159456600	Weak transcription	Liver	Liver
4	chr1:159442600-159443400	Enhancers	HMEC	breast
5	chr1:159442600-159443600	Enhancers	Osteobl	bone

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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