Variant report

Variant	rs115824482
Chromosome Location	chr21:40344293-40344294
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 14 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:14 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1062425	chr21:40172471-40380976	Enhancers Flanking Active TSS Weak transcription Genic enhancers Flanking Bivalent TSS/Enh Strong transcription Active TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	47 gene(s)	inside rSNPs	diseases
2	nsv544442	chr21:40172471-40380976	Enhancers Genic enhancers Active TSS Weak transcription Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	47 gene(s)	inside rSNPs	diseases
3	nsv587477	chr21:40228920-40512004	Enhancers Flanking Active TSS Weak transcription Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Active TSS Genic enhancers Bivalent/Poised TSS Strong transcription Transcr. at gene 5' and 3'	TF binding region Chromatin interactive region lncRNA	35 gene(s)	inside rSNPs	diseases
4	esv2626960	chr21:40343696-40345353	Weak transcription Enhancers ZNF genes & repeats	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
5	esv1941131	chr21:40344129-40344818	Weak transcription	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
6	esv3455221	chr21:40344184-40344719	Weak transcription	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
7	esv3490925	chr21:40344186-40344695	Weak transcription	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
8	esv3490926	chr21:40344210-40344722	Weak transcription	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
9	esv3490927	chr21:40344211-40344712	Weak transcription	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
10	esv4192	chr21:40344232-40344687	Weak transcription	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
11	esv3455216	chr21:40344240-40344697	Weak transcription	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
12	esv3455220	chr21:40344242-40344648	Weak transcription	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
13	esv3455218	chr21:40344250-40344666	Weak transcription	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
14	esv3455217	chr21:40344292-40344634	Weak transcription	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr21:40332000-40356800	Weak transcription	Right Atrium	heart
2	chr21:40338400-40351200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
3	chr21:40339000-40351200	Weak transcription	Fetal Intestine Small	intestine
4	chr21:40341600-40347000	Weak transcription	Primary hematopoietic stem cells	blood
5	chr21:40341600-40347000	Weak transcription	Dnd41	blood
6	chr21:40341600-40350600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
7	chr21:40341800-40347200	Weak transcription	Primary hematopoietic stem cells short term culture	blood
8	chr21:40343200-40345000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
9	chr21:40343800-40345800	Weak transcription	Fetal Thymus	thymus
10	chr21:40343800-40346200	Weak transcription	Thymus	Thymus
11	chr21:40344000-40348400	Weak transcription	Spleen	Spleen

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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