Variant report

Variant	rs11583820
Chromosome Location	chr1:226643747-226643748
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 3 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:1)

rs_ID	r²[population]
rs3219134	1.00[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832770	chr1:226465130-226655512	Strong transcription Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	20 gene(s)	inside rSNPs	diseases
2	nsv832781	chr1:226570901-226750697	Strong transcription Enhancers Flanking Active TSS Weak transcription Genic enhancers Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:226623200-226651600	Weak transcription	Right Atrium	heart
2	chr1:226629600-226649000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
3	chr1:226631600-226645000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
4	chr1:226631600-226650600	Weak transcription	H9 Cell Line	embryonic stem cell
5	chr1:226636600-226645000	Weak transcription	HUES48 Cell Line	embryonic stem cell
6	chr1:226636600-226645000	Weak transcription	iPS-15b Cell Line	embryonic stem cell
7	chr1:226639000-226645000	Weak transcription	HUES6 Cell Line	embryonic stem cell
8	chr1:226642200-226643800	Weak transcription	Fetal Brain Male	brain
9	chr1:226643600-226643800	Enhancers	Gastric	stomach

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dbSNP/dbVar ID: rs12345 /nsv7879
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chromosomal regions: chr1:12345-34567

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