Variant report

Variant	rs11584755
Chromosome Location	chr1:154252208-154252209
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr1:153938174..153939881-chr1:154251981..154254395,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000273026	Chromatin interaction

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs11586916	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12142550	0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12354278	0.90[ASN][1000 genomes]
rs13796	0.90[ASN][1000 genomes]
rs61807361	0.83[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs6667222	0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7521837	0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv999364	chr1:153622634-154419436	Strong transcription Genic enhancers Flanking Active TSS Active TSS Weak transcription Transcr. at gene 5' and 3' Enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	286 gene(s)	inside rSNPs	diseases
2	nsv535175	chr1:153622634-154419436	Enhancers Weak transcription Active TSS Transcr. at gene 5' and 3' Flanking Active TSS Genic enhancers Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	286 gene(s)	inside rSNPs	diseases
3	esv1830240	chr1:153885261-154370938	Enhancers Flanking Active TSS Weak transcription Genic enhancers Active TSS Transcr. at gene 5' and 3' Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	239 gene(s)	inside rSNPs	diseases
4	nsv948413	chr1:153974621-154797272	Enhancers Weak transcription Strong transcription Flanking Active TSS Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3' Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	132 gene(s)	inside rSNPs	diseases
5	nsv1000402	chr1:153991106-154527053	Strong transcription Flanking Active TSS Enhancers Genic enhancers Flanking Bivalent TSS/Enh Weak transcription Transcr. at gene 5' and 3' Active TSS Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	106 gene(s)	inside rSNPs	diseases
6	esv3451054	chr1:154182013-154360141	Genic enhancers Flanking Active TSS Strong transcription Enhancers Weak transcription Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	49 gene(s)	inside rSNPs	diseases
7	nsv521887	chr1:154236570-154684106	Strong transcription Flanking Active TSS Active TSS Weak transcription Enhancers Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	65 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:36 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:154246200-154259400	Weak transcription	Right Atrium	heart
2	chr1:154246600-154253400	Weak transcription	HepG2	liver
3	chr1:154248000-154252600	Weak transcription	Brain Hippocampus Middle	brain
4	chr1:154248200-154252400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
5	chr1:154248200-154255200	Weak transcription	Pancreas	Pancrea
6	chr1:154248400-154252400	Weak transcription	HUES48 Cell Line	embryonic stem cell
7	chr1:154248400-154252400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
8	chr1:154248400-154252400	Weak transcription	Brain Angular Gyrus	brain
9	chr1:154248400-154252400	Weak transcription	Thymus	Thymus
10	chr1:154248400-154252600	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
11	chr1:154248400-154253200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
12	chr1:154248400-154255000	Weak transcription	A549	lung
13	chr1:154248400-154255800	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
14	chr1:154248400-154256800	Weak transcription	Rectal Mucosa Donor 31	rectum
15	chr1:154248400-154261000	Weak transcription	K562	blood
16	chr1:154248600-154252600	Weak transcription	HUES6 Cell Line	embryonic stem cell
17	chr1:154248600-154252600	Weak transcription	Fetal Brain Female	brain
18	chr1:154249200-154252600	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
19	chr1:154249400-154252400	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
20	chr1:154249400-154252400	Weak transcription	Primary T helper cells PMA-I stimulated	--
21	chr1:154249400-154252800	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
22	chr1:154249400-154252800	Weak transcription	Fetal Intestine Large	intestine
23	chr1:154249400-154255000	Weak transcription	Spleen	Spleen
24	chr1:154249600-154252400	Weak transcription	Fetal Muscle Trunk	muscle
25	chr1:154249600-154252400	Weak transcription	Skeletal Muscle Male	skeletal muscle
26	chr1:154249600-154254000	Weak transcription	Ovary	ovary
27	chr1:154249600-154255000	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
28	chr1:154250600-154253200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
29	chr1:154250800-154252400	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
30	chr1:154250800-154252400	Weak transcription	Brain Inferior Temporal Lobe	brain
31	chr1:154250800-154252600	Weak transcription	Fetal Intestine Small	intestine
32	chr1:154250800-154253400	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
33	chr1:154250800-154254000	Weak transcription	Primary T cells fromperipheralblood	blood
34	chr1:154250800-154259400	Weak transcription	Lung	lung
35	chr1:154251200-154252800	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
36	chr1:154251200-154253200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived

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