Variant report

Variant	rs11584929
Chromosome Location	chr1:170031417-170031418
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr1:170030478..170033349-chr1:170042564..170044443,2	K562	blood:

Variant related genes	Relation type
ENSG00000075945	Chromatin interaction

Extended variants
information (count: 24 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:22)

rs_ID	r²[population]
rs1330377	0.98[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs1541160	1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2065950	0.95[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs2474708	1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28441321	1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs476269	0.90[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs522444	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs527261	0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs541655	0.89[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs541896	1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs546894	0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs571398	0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs614044	1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs628436	1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6427232	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6668310	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6694304	1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs693673	0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72715936	0.98[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7539241	0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9427175	0.87[AMR][1000 genomes];0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs973015	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1014033	chr1:169968488-170453021	Flanking Active TSS Enhancers Active TSS Weak transcription Strong transcription ZNF genes & repeats Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	18 gene(s)	inside rSNPs	diseases
2	nsv535200	chr1:169968488-170453021	Weak transcription Flanking Active TSS Strong transcription Active TSS Enhancers ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	18 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:31 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:169952400-170043000	Weak transcription	Skeletal Muscle Female	skeletal muscle
2	chr1:169999800-170036600	Weak transcription	Small Intestine	intestine
3	chr1:170002800-170036400	Weak transcription	NHDF-Ad	bronchial
4	chr1:170007600-170031800	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
5	chr1:170008200-170032200	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
6	chr1:170008800-170031800	Weak transcription	Placenta Amnion	Placenta Amnion
7	chr1:170014000-170032200	Weak transcription	Left Ventricle	heart
8	chr1:170018200-170042400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
9	chr1:170018600-170035800	Weak transcription	Liver	Liver
10	chr1:170018800-170032200	Weak transcription	Ovary	ovary
11	chr1:170018800-170034600	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
12	chr1:170018800-170037000	Weak transcription	Primary T helper naive cells from peripheral blood	blood
13	chr1:170018800-170040600	Weak transcription	Aorta	Aorta
14	chr1:170019000-170035600	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
15	chr1:170019000-170037000	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
16	chr1:170019000-170041400	Weak transcription	Colon Smooth Muscle	Colon
17	chr1:170019000-170042600	Weak transcription	Thymus	Thymus
18	chr1:170019200-170036800	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
19	chr1:170019200-170042400	Weak transcription	Fetal Lung	lung
20	chr1:170024000-170036400	Weak transcription	Duodenum Smooth Muscle	Duodenum
21	chr1:170024200-170032000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
22	chr1:170024400-170037800	Weak transcription	Primary T cells from cord blood	blood
23	chr1:170024600-170032200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
24	chr1:170024600-170032200	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
25	chr1:170024600-170036800	Weak transcription	Primary T helper cells fromperipheralblood	blood
26	chr1:170024800-170032400	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
27	chr1:170027800-170036600	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
28	chr1:170030600-170032200	Weak transcription	A549	lung
29	chr1:170031400-170031800	ZNF genes & repeats	GM12878-XiMat	blood
30	chr1:170031400-170032200	Enhancers	NHEK	skin
31	chr1:170031400-170033800	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast

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