Variant report

Variant	rs11585862
Chromosome Location	chr1:57873788-57873789
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 4 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:2)

rs_ID	r²[population]
rs11588115	1.00[CEU][hapmap];1.00[JPT][hapmap];1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs72674873	0.84[AMR][1000 genomes];0.88[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv817216	chr1:57801783-58130775	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
2	nsv1001771	chr1:57837089-58068175	Bivalent/Poised TSS Weak transcription Enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Active TSS Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:21 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:57860400-57874600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
2	chr1:57863800-57875400	Weak transcription	iPS-20b Cell Line	embryonic stem cell
3	chr1:57867600-57874400	Weak transcription	H9 Cell Line	embryonic stem cell
4	chr1:57867800-57874600	Weak transcription	HUES6 Cell Line	embryonic stem cell
5	chr1:57867800-57875400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
6	chr1:57870400-57874800	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
7	chr1:57870400-57874800	Enhancers	Fetal Brain Male	brain
8	chr1:57871000-57887600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
9	chr1:57872800-57873800	Enhancers	Fetal Lung	lung
10	chr1:57873000-57874400	Enhancers	Fetal Brain Female	brain
11	chr1:57873000-57874600	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
12	chr1:57873000-57874600	Enhancers	Stomach Smooth Muscle	stomach
13	chr1:57873200-57875000	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
14	chr1:57873200-57877200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
15	chr1:57873400-57873800	Weak transcription	Fetal Stomach	stomach
16	chr1:57873400-57874600	Enhancers	iPS-15b Cell Line	embryonic stem cell
17	chr1:57873600-57874200	Enhancers	Stomach Mucosa	stomach
18	chr1:57873600-57874200	Enhancers	HepG2	liver
19	chr1:57873600-57874600	Enhancers	Colon Smooth Muscle	Colon
20	chr1:57873600-57874800	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
21	chr1:57873600-57877600	Enhancers	HUES64 Cell Line	embryonic stem cell

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