Variant report

Variant	rs115866277
Chromosome Location	chr7:150924453-150924454
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	STAT3	chr7:150924371-150924476	MCF10A-Er-Src	breast:	n/a	n/a
2	NFYB	chr7:150924142-150924755	K562	blood:	n/a	chr7:150924317-150924331 chr7:150924316-150924328 chr7:150924319-150924329 chr7:150924314-150924329 chr7:150924317-150924332 chr7:150924317-150924330 chr7:150924317-150924332
3	GABPA	chr7:150924035-150924787	MCF-7	breast:	n/a	n/a
4	TAF1	chr7:150924018-150924695	GM12878	blood:	n/a	n/a
5	SP1	chr7:150924111-150924700	GM12878	blood:	n/a	chr7:150924481-150924495 chr7:150924484-150924496 chr7:150924484-150924496 chr7:150924479-150924488 chr7:150924484-150924495 chr7:150924485-150924494
6	TCF7L2	chr7:150924267-150924549	PANC-1	pancreas:	n/a	n/a
7	USF1	chr7:150924117-150924545	A549	lung:	n/a	n/a
8	SIX5	chr7:150924115-150924817	H1-hESC	embryonic stem cell:	n/a	chr7:150924680-150924689 chr7:150924678-150924692 chr7:150924369-150924378 chr7:150924224-150924233 chr7:150924682-150924691
9	RFX5	chr7:150924144-150924749	HepG2	liver:	n/a	chr7:150924320-150924329 chr7:150924272-150924280
10	ATF3	chr7:150924061-150924797	K562	blood:	n/a	chr7:150924452-150924463 chr7:150924442-150924462 chr7:150924453-150924473
11	POLR2A	chr7:150923928-150924807	Gliobla	brain:	n/a	n/a
12	ELK1	chr7:150924288-150924818	Hela-S3	cervix:	n/a	n/a
13	CEBPB	chr7:150924094-150924484	HepG2	liver:	n/a	chr7:150924320-150924328
14	CREB1	chr7:150924026-150924863	H1-hESC	embryonic stem cell:	n/a	chr7:150924451-150924464
15	USF2	chr7:150924351-150924586	K562	blood:	n/a	n/a
16	ZKSCAN1	chr7:150923940-150924797	Hela-S3	cervix:	n/a	n/a
17	SRF	chr7:150924003-150924853	MCF-7	breast:	n/a	chr7:150924304-150924314 chr7:150924483-150924493
18	SP1	chr7:150923923-150924799	A549	lung:	n/a	chr7:150924481-150924495 chr7:150924484-150924496 chr7:150924484-150924496 chr7:150924479-150924488 chr7:150924484-150924495 chr7:150924485-150924494
19	JUND	chr7:150924256-150924628	HepG2	liver:	n/a	n/a
20	MYC	chr7:150924091-150924629	MCF10A-Er-Src	breast:	n/a	chr7:150924483-150924493
21	GABPA	chr7:150924346-150924553	HepG2	liver:	n/a	n/a
22	GATA3	chr7:150924370-150924665	T-47D	breast:	n/a	n/a
23	POLR2A	chr7:150924100-150924821	HepG2	liver:	n/a	n/a
24	CTCF	chr7:150924343-150924548	Spleen_OC	spleen:	n/a	chr7:150924513-150924526 chr7:150924479-150924492
25	TCF12	chr7:150923989-150924861	ECC-1	luminal epithelium:	n/a	n/a
26	CEBPB	chr7:150923896-150924719	H1-hESC	embryonic stem cell:	n/a	chr7:150924320-150924328
27	ZBTB33	chr7:150924197-150924590	A549	lung:	n/a	chr7:150924440-150924450
28	SRF	chr7:150924237-150924641	K562	blood:	n/a	chr7:150924304-150924314 chr7:150924483-150924493
29	EP300	chr7:150924022-150924593	GM12878	blood:	n/a	n/a
30	POLR2A	chr7:150924029-150924747	HepG2	liver:	n/a	n/a
31	POLR2A	chr7:150924411-150924593	A549	lung:	n/a	n/a
32	CTCF	chr7:150924400-150924550	AG04449	skin:	n/a	chr7:150924513-150924526 chr7:150924479-150924492
33	ARID3A	chr7:150924259-150924615	K562	blood:	n/a	n/a
34	SP1	chr7:150924181-150924763	H1-hESC	embryonic stem cell:	n/a	chr7:150924481-150924495 chr7:150924484-150924496 chr7:150924484-150924496 chr7:150924479-150924488 chr7:150924484-150924495 chr7:150924485-150924494
35	TCF12	chr7:150923703-150924976	A549	lung:	n/a	n/a
36	POLR2A	chr7:150924417-150924864	H1-hESC	embryonic stem cell:	n/a	n/a
37	CEBPB	chr7:150924085-150924523	HepG2	liver:	n/a	chr7:150924320-150924328
38	TAF1	chr7:150924061-150924890	SK-N-SH	brain:	n/a	n/a
39	MAZ	chr7:150923985-150924810	Hela-S3	cervix:	n/a	chr7:150924483-150924493
40	POLR2A	chr7:150924009-150924991	GM12878	blood:	n/a	n/a
41	TBL1XR1	chr7:150923842-150924689	K562	blood:	n/a	n/a
42	SMC3	chr7:150924104-150924883	Hela-S3	cervix:	n/a	n/a
43	MTA3	chr7:150923608-150924979	GM12878	blood:	n/a	n/a
44	E2F4	chr7:150924305-150924583	GM12878	blood:	n/a	chr7:150924319-150924328
45	STAT3	chr7:150924353-150924493	MCF10A-Er-Src	breast:	n/a	n/a
46	CTCF	chr7:150924380-150924530	HMEC	breast:	n/a	chr7:150924513-150924526 chr7:150924479-150924492
47	POLR2A	chr7:150923893-150925071	MCF-7	breast:	n/a	n/a
48	POLR2A	chr7:150924024-150924937	GM12878	blood:	n/a	n/a
49	POLR2A	chr7:150923848-150925013	HUVEC	blood vessel:	n/a	n/a
50	CHD2	chr7:150923879-150924801	GM12878	blood:	n/a	n/a

No.	Chromosome Location	Cell Line	Cell type	Cell Stage
1	chr7:150924450-150924500	HNPCEpiC	eye:	n/a
2	chr7:150924444-150924494	NH-A	brain:	n/a
3	chr7:150924444-150924494	SKMC	muscle:	n/a
4	chr7:150924442-150924492	MCF-7	breast:	n/a
5	chr7:150924442-150924492	NHBE	bronchial:	n/a
6	chr7:150924444-150924494	RPTEC	kidney:	n/a
7	chr7:150924450-150924500	HCPEpiC	choroid plexus:	n/a
8	chr7:150924442-150924492	ovcar-3	ovarian:	n/a
9	chr7:150924444-150924494	HUVEC	blood vessel:	n/a
10	chr7:150924409-150924459	H1-hESC	embryonic stem cell:	embryo
11	chr7:150924444-150924494	PANC-1	pancreas:	n/a
12	chr7:150924442-150924492	Hepatocyte	liver:	n/a
13	chr7:150924409-150924459	GM12891	blood:	n/a
14	chr7:150924442-150924492	BJ	skin:	n/a
15	chr7:150924444-150924494	T-47D	breast:	n/a
16	chr7:150924409-150924459	HEK293	kidney:	embryo
17	chr7:150924409-150924459	Jurkat	blood:	n/a
18	chr7:150924409-150924459	HRPEpiC	eye:	n/a
19	chr7:150924442-150924492	HRE	kidney:	n/a
20	chr7:150924442-150924492	HAEpiC	amniotic membrane:	n/a
21	chr7:150924409-150924459	LNCaP	prostate:	n/a
22	chr7:150924442-150924492	AG04450	lung:	fetal
23	chr7:150924444-150924494	Caco-2	colon:	n/a
24	chr7:150924450-150924500	GM06990	blood:	n/a
25	chr7:150924444-150924494	H1-hESC	embryonic stem cell:	embryo
26	chr7:150924450-150924500	LNCaP	prostate:	n/a
27	chr7:150924450-150924500	HRE	kidney:	n/a
28	chr7:150924450-150924500	SK-N-SH_RA	brain:	n/a
29	chr7:150924450-150924500	A549	lung:	n/a
30	chr7:150924450-150924500	AG04449	skin:	fetal
31	chr7:150924442-150924492	SK-N-MC	brain:	n/a
32	chr7:150924450-150924500	HEEpiC	esophagus:	n/a
33	chr7:150924450-150924500	Hepatocyte	liver:	n/a
34	chr7:150924444-150924494	HCPEpiC	choroid plexus:	n/a
35	chr7:150924450-150924500	GM12892	blood:	n/a
36	chr7:150924442-150924492	BE2_C	brain:	n/a
37	chr7:150924442-150924492	ProgFib	skin:	n/a
38	chr7:150924409-150924459	SK-N-MC	brain:	n/a
39	chr7:150924444-150924494	AG04449	skin:	fetal
40	chr7:150924450-150924500	K562	blood:	n/a
41	chr7:150924444-150924494	HRPEpiC	eye:	n/a
42	chr7:150924444-150924494	GM19239	blood:	n/a
43	chr7:150924409-150924459	HEEpiC	esophagus:	n/a
44	chr7:150924409-150924459	AG10803	skin:	n/a
45	chr7:150924409-150924459	GM12892	blood:	n/a
46	chr7:150924444-150924494	AoSMC	blood vessel:	n/a
47	chr7:150924444-150924494	AG09319	gingival:	n/a
48	chr7:150924442-150924492	GM12878	blood:	n/a
49	chr7:150924444-150924494	A549	lung:	n/a
50	chr7:150924442-150924492	H1-hESC	embryonic stem cell:	embryo

No.	Distal block	Cell Line	Cell type
1	chr7:150725439..150727092-chr7:150922758..150925738,2	K562	blood:
2	chr7:150100452..150102413-chr7:150924282..150926650,2	K562	blood:
3	chr7:150755192..150758087-chr7:150922401..150925767,3	K562	blood:
4	chr7:150923377..150925570-chr7:151215684..151217252,2	K562	blood:
5	chr7:150923836..150926071-chr7:150936441..150939158,3	MCF-7	breast:
6	chr7:150922541..150925891-chr7:150969834..150974111,4	K562	blood:
7	chr7:150891570..150894014-chr7:150923322..150926505,4	K562	blood:
8	chr17:62502100..62502693-chr7:150924274..150925173,2	HCT-116	colon:
9	chr7:150923495..150927436-chr7:150940006..150942925,4	MCF-7	breast:

Variant related genes	Relation type
ABCF2	TF binding region
ABCF2	CpG island
ENSG00000164889	Chromatin interaction
ENSG00000196456	Chromatin interaction
ENSG00000164885	Chromatin interaction
ENSG00000272661	Chromatin interaction
ENSG00000243433	Chromatin interaction
ENSG00000108654	Chromatin interaction
ENSG00000183016	Chromatin interaction
ENSG00000082014	Chromatin interaction
ENSG00000197150	Chromatin interaction
ENSG00000106615	Chromatin interaction

Extended variants
information (count: 5 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv1821419	chr7:150593315-150974269	Enhancers Strong transcription Weak transcription Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	128 gene(s)	inside rSNPs	diseases
2	nsv889476	chr7:150729212-150951819	Enhancers Weak transcription Active TSS Flanking Bivalent TSS/Enh Genic enhancers Flanking Active TSS Bivalent Enhancer Strong transcription Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	120 gene(s)	inside rSNPs	diseases
3	nsv609035	chr7:150896223-150955765	Bivalent Enhancer Active TSS Bivalent/Poised TSS Enhancers Weak transcription Flanking Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Strong transcription Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	73 gene(s)	inside rSNPs	diseases
4	nsv889487	chr7:150922952-150988172	Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Weak transcription Enhancers Bivalent/Poised TSS Genic enhancers Bivalent Enhancer Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	73 gene(s)	inside rSNPs	diseases
5	nsv435860	chr7:150923672-150930735	Flanking Active TSS Active TSS Weak transcription Enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	21 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:127 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:150923000-150925200	Active TSS	HUES48 Cell Line	embryonic stem cell
2	chr7:150923200-150925200	Active TSS	H9 Cell Line	embryonic stem cell
3	chr7:150923200-150925200	Active TSS	HUES64 Cell Line	embryonic stem cell
4	chr7:150923200-150925200	Active TSS	iPS DF 6.9 Cell Line	embryonic stem cell
5	chr7:150923400-150924800	Transcr. at gene 5' and 3'	Primary T helper 17 cells PMA-I stimulated	--
6	chr7:150923400-150925000	Active TSS	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
7	chr7:150923400-150925000	Active TSS	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
8	chr7:150923400-150925000	Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
9	chr7:150923400-150925000	Active TSS	Breast Myoepithelial Primary Cells	Breast
10	chr7:150923400-150925000	Active TSS	Aorta	Aorta
11	chr7:150923400-150925000	Active TSS	Fetal Kidney	kidney
12	chr7:150923400-150925200	Active TSS	ES-I3 Cell Line	embryonic stem cell
13	chr7:150923400-150925200	Active TSS	ES-WA7 Cell Line	embryonic stem cell
14	chr7:150923400-150925200	Active TSS	iPS-15b Cell Line	embryonic stem cell
15	chr7:150923400-150925200	Active TSS	iPS-18 Cell Line	embryonic stem cell
16	chr7:150923400-150925200	Active TSS	iPS-20b Cell Line	embryonic stem cell
17	chr7:150923400-150925200	Flanking Active TSS	Primary mononuclear cells fromperipheralblood	Blood
18	chr7:150923400-150925200	Active TSS	A549	lung
19	chr7:150923600-150924800	Active TSS	Primary T helper cells PMA-I stimulated	--
20	chr7:150923600-150924800	Active TSS	Hela-S3	cervix
21	chr7:150923600-150924800	Active TSS	K562	blood
22	chr7:150923600-150925000	Active TSS	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
23	chr7:150923600-150925000	Active TSS	H1 Derived Mesenchymal Stem Cells	ES cell derived
24	chr7:150923600-150925000	Active TSS	HUES6 Cell Line	embryonic stem cell
25	chr7:150923600-150925000	Active TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
26	chr7:150923600-150925000	Active TSS	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
27	chr7:150923600-150925000	Active TSS	Muscle Satellite Cultured Cells	--
28	chr7:150923600-150925000	Active TSS	Foreskin Melanocyte Primary Cells skin03	Skin
29	chr7:150923600-150925000	Active TSS	Brain Dorsolateral Prefrontal Cortex	brain
30	chr7:150923600-150925000	Active TSS	Duodenum Smooth Muscle	Duodenum
31	chr7:150923600-150925000	Active TSS	Fetal Brain Male	brain
32	chr7:150923600-150925000	Active TSS	Left Ventricle	heart
33	chr7:150923600-150925000	Active TSS	Lung	lung
34	chr7:150923600-150925000	Active TSS	Sigmoid Colon	Sigmoid Colon
35	chr7:150923600-150925000	Active TSS	Small Intestine	intestine
36	chr7:150923600-150925000	Active TSS	GM12878-XiMat	blood
37	chr7:150923600-150925000	Active TSS	HMEC	breast
38	chr7:150923600-150925000	Active TSS	HSMM	muscle
39	chr7:150923600-150925000	Active TSS	NHDF-Ad	bronchial
40	chr7:150923600-150925000	Active TSS	NHEK	skin
41	chr7:150923600-150925000	Active TSS	NHLF	lung
42	chr7:150923600-150925200	Active TSS	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
43	chr7:150923600-150925200	Active TSS	IMR90 fetal lung fibroblasts Cell Line	lung
44	chr7:150923600-150925200	Active TSS	Foreskin Fibroblast Primary Cells skin01	Skin
45	chr7:150923600-150925200	Active TSS	Foreskin Melanocyte Primary Cells skin01	Skin
46	chr7:150923600-150925200	Active TSS	Esophagus	oesophagus
47	chr7:150923600-150925200	Active TSS	Ovary	ovary
48	chr7:150923600-150925200	Active TSS	Placenta Amnion	Placenta Amnion
49	chr7:150923600-150925200	Active TSS	Right Atrium	heart
50	chr7:150923600-150925200	Active TSS	Right Ventricle	heart

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links