Variant report

Variant	rs11586638
Chromosome Location	chr18:57034176-57034177
allele	C/G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 21 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs11163904	0.98[AMR][1000 genomes];0.95[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs11163915	0.86[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs11163967	0.82[EUR][1000 genomes]
rs11576534	0.98[AMR][1000 genomes];0.95[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs11589276	1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12125933	0.84[EUR][1000 genomes]
rs12126155	0.84[EUR][1000 genomes]
rs12129523	0.83[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs12130334	0.82[EUR][1000 genomes]
rs12131344	0.86[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs12131493	0.86[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs12132503	0.86[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs12132750	0.86[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs17585530	0.84[EUR][1000 genomes]
rs1846233	0.81[EUR][1000 genomes]
rs2147039	0.83[EUR][1000 genomes]
rs4638068	0.81[EUR][1000 genomes]
rs57249318	0.86[AMR][1000 genomes];0.84[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv534277	chr18:56607036-57387904	Enhancers Flanking Active TSS Weak transcription Strong transcription Bivalent Enhancer Active TSS Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	21 gene(s)	inside rSNPs	diseases
2	nsv1066458	chr18:56789217-57425408	Weak transcription Enhancers Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer Strong transcription Active TSS Flanking Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	19 gene(s)	inside rSNPs	diseases
3	nsv543719	chr18:56789217-57425408	Weak transcription Enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Flanking Active TSS Active TSS Strong transcription Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	19 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr18:57027200-57039600	Weak transcription	HSMM	muscle

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dbSNP/dbVar ID: rs12345 /nsv7879
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chromosomal regions: chr1:12345-34567

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