Variant report

Variant	rs11587364
Chromosome Location	chr1:145590192-145590193
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:44)
CpG islands
(count:61)
Chromatin interactive
region (count:10)
LncRNA
region (count:1)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

(count:44 , 50 per page) page: 1

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	POLR2A	chr1:145589900-145590406	K562	blood:	n/a	n/a
2	BCLAF1	chr1:145589127-145590263	GM12878	blood:	n/a	n/a
3	SMC3	chr1:145588341-145590305	SK-N-SH	brain:	n/a	n/a
4	BCL3	chr1:145588301-145590929	A549	lung:	n/a	n/a
5	POLR2A	chr1:145588851-145590444	HepG2	liver:	n/a	n/a
6	POLR2A	chr1:145588426-145590367	U87	brain:	n/a	n/a
7	PML	chr1:145588368-145590261	GM12878	blood:	n/a	n/a
8	POLR2A	chr1:145590113-145590992	U87	brain:	n/a	n/a
9	POLR2A	chr1:145588081-145591648	SK-N-SH	brain:	n/a	n/a
10	MTA3	chr1:145588334-145590630	GM12878	blood:	n/a	n/a
11	POLR2A	chr1:145588146-145591471	MCF-7	breast:	n/a	n/a
12	CTCF	chr1:145590183-145590281	MCF-7	breast:	n/a	n/a
13	POLR2A	chr1:145588159-145590425	K562	blood:	n/a	n/a
14	SPI1	chr1:145589333-145590293	GM12878	blood:	n/a	n/a
15	CTCF	chr1:145588292-145590228	MCF-7	breast:	n/a	n/a
16	POLR2A	chr1:145588289-145592221	A549	lung:	n/a	n/a
17	POLR2A	chr1:145590162-145590583	U87	brain:	n/a	n/a
18	POLR2A	chr1:145588472-145590244	HUVEC	blood vessel:	n/a	n/a
19	POLR2A	chr1:145588350-145592193	GM12892	blood:	n/a	n/a
20	POLR2A	chr1:145588900-145590510	HL-60	blood:	n/a	n/a
21	POLR2A	chr1:145588528-145590298	ProgFib	skin:	n/a	n/a
22	MAX	chr1:145588301-145590231	MCF-7	breast:	n/a	n/a
23	POLR2A	chr1:145588194-145591033	Hela-S3	cervix:	n/a	n/a
24	POLR2A	chr1:145588148-145590633	HUVEC	blood vessel:	n/a	n/a
25	POLR2A	chr1:145588143-145591382	MCF10A-Er-Src	breast:	n/a	n/a
26	POLR2A	chr1:145588206-145590318	Hela-S3	cervix:	n/a	n/a
27	POLR2A	chr1:145588434-145590341	GM12878	blood:	n/a	n/a
28	POLR2A	chr1:145588454-145590439	GM12891	blood:	n/a	n/a
29	POLR2A	chr1:145588683-145590956	GM12892	blood:	n/a	n/a
30	POLR2A	chr1:145588183-145592184	K562	blood:	n/a	n/a
31	POLR2A	chr1:145588595-145590588	GM12891	blood:	n/a	n/a
32	POLR2A	chr1:145590054-145590243	GM12878	blood:	n/a	n/a
33	GATA3	chr1:145588180-145590236	MCF-7	breast:	n/a	n/a
34	POLR2A	chr1:145588460-145590439	HUVEC	blood vessel:	n/a	n/a
35	POLR2A	chr1:145588234-145591481	PANC-1	pancreas:	n/a	n/a
36	POLR2A	chr1:145590167-145590640	PFSK-1	brain:	n/a	n/a
37	POLR2A	chr1:145589169-145590206	Raji	blood:	n/a	n/a
38	POLR2A	chr1:145589887-145590285	ECC-1	luminal epithelium:	n/a	n/a
39	POLR2A	chr1:145588299-145591659	SK-N-MC	brain:	n/a	n/a
40	POLR2A	chr1:145588390-145590325	H1-hESC	embryonic stem cell:	n/a	n/a
41	CTCF	chr1:145588123-145590297	SK-N-SH	brain:	n/a	n/a
42	POLR2A	chr1:145588085-145591609	PANC-1	pancreas:	n/a	n/a
43	POLR2A	chr1:145589002-145590246	HL-60	blood:	n/a	n/a
44	POLR2A	chr1:145588483-145590409	GM12891	blood:	n/a	n/a

(count:61 , 50 per page) page: 1 2

No.	Chromosome Location	Cell Line	Cell type	Cell Stage
1	chr1:145590148-145590198	GM19239	blood:	n/a
2	chr1:145590148-145590198	SK-N-MC	brain:	n/a
3	chr1:145590148-145590198	NH-A	brain:	n/a
4	chr1:145590148-145590198	HL-60	blood:	n/a
5	chr1:145590148-145590198	HAEpiC	amniotic membrane:	n/a
6	chr1:145590148-145590198	HUVEC	blood vessel:	n/a
7	chr1:145590148-145590198	HMEC	breast:	n/a
8	chr1:145590148-145590198	IMR90	lung:	fetal
9	chr1:145590148-145590198	SK-N-SH_RA	brain:	n/a
10	chr1:145590148-145590198	PANC-1	pancreas:	n/a
11	chr1:145590148-145590198	HPAEpiC	pulmonary alveolar:	n/a
12	chr1:145590148-145590198	A549	lung:	n/a
13	chr1:145590148-145590198	SKMC	muscle:	n/a
14	chr1:145590148-145590198	HEEpiC	esophagus:	n/a
15	chr1:145590148-145590198	Caco-2	colon:	n/a
16	chr1:145590148-145590198	AG09309	skin:	n/a
17	chr1:145590148-145590198	ovcar-3	ovarian:	n/a
18	chr1:145590148-145590198	LNCaP	prostate:	n/a
19	chr1:145590148-145590198	PrEC	prostate:	n/a
20	chr1:145590148-145590198	SAEC	small airway:	n/a
21	chr1:145590148-145590198	HRCEpiC	kidney:	n/a
22	chr1:145590148-145590198	Hela-S3	cervix:	n/a
23	chr1:145590148-145590198	HCPEpiC	choroid plexus:	n/a
24	chr1:145590148-145590198	HNPCEpiC	eye:	n/a
25	chr1:145590148-145590198	MCF-7	breast:	n/a
26	chr1:145590148-145590198	NHDF-neo	bronchial:	n/a
27	chr1:145590148-145590198	MCF10A-Er-Src	breast:	n/a
28	chr1:145590148-145590198	NB4	blood:	n/a
29	chr1:145590148-145590198	T-47D	breast:	n/a
30	chr1:145590148-145590198	GM06990	blood:	n/a
31	chr1:145590148-145590198	H1-hESC	embryonic stem cell:	embryo
32	chr1:145590148-145590198	Jurkat	blood:	n/a
33	chr1:145590148-145590198	CMK	blood:	n/a
34	chr1:145590148-145590198	AG04450	lung:	fetal
35	chr1:145590148-145590198	AG09319	gingival:	n/a
36	chr1:145590148-145590198	AoSMC	blood vessel:	n/a
37	chr1:145590148-145590198	ProgFib	skin:	n/a
38	chr1:145590148-145590198	RPTEC	kidney:	n/a
39	chr1:145590148-145590198	HRE	kidney:	n/a
40	chr1:145590148-145590198	GM12891	blood:	n/a
41	chr1:145590148-145590198	NHBE	bronchial:	n/a
42	chr1:145590148-145590198	AG10803	skin:	n/a
43	chr1:145590148-145590198	HIPEpiC	eye:	n/a
44	chr1:145590148-145590198	GM12892	blood:	n/a
45	chr1:145590148-145590198	HCT-116	colon:	n/a
46	chr1:145590148-145590198	NT2-D1	testis:	n/a
47	chr1:145590148-145590198	GM12878	blood:	n/a
48	chr1:145590148-145590198	BJ	skin:	n/a
49	chr1:145590148-145590198	SK-N-SH	brain:	n/a
50	chr1:145590148-145590198	U87	brain:	n/a

(count:10 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr1:145589799..145592582-chr1:145728018..145730944,2	K562	blood:
2	chr1:145506288..145509580-chr1:145587874..145591202,3	K562	blood:
3	chr1:145589514..145591359-chr1:145604976..145606694,2	MCF-7	breast:
4	chr1:145589031..145591463-chr1:145713526..145716074,2	MCF-7	breast:
5	chr1:145476827..145479205-chr1:145588287..145590724,2	MCF-7	breast:
6	chr1:145381926..145385386-chr1:145586664..145591054,3	K562	blood:
7	chr1:145587359..145592816-chr1:145606850..145611963,8	MCF-7	breast:
8	chr1:145506288..145507887-chr1:145587874..145590549,2	K562	blood:
9	chr1:145514560..145518718-chr1:145589499..145593117,4	K562	blood:
10	chr1:145436689..145440036-chr1:145587562..145590530,4	MCF-7	breast:

(count:1 , 50 per page) page: 1

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-NUDT17-1	chr1:145588588-145590461	NONHSAT005952

No data

Variant related genes	Relation type
NUDT17	TF binding region
NUDT17	CpG island
ENSG00000233396	Chromatin interaction
ENSG00000121848	Chromatin interaction
ENSG00000131795	Chromatin interaction
ENSG00000117281	Chromatin interaction
ENSG00000117289	Chromatin interaction
ENSG00000186141	Chromatin interaction
ENSG00000201558	Chromatin interaction
ENSG00000152022	Chromatin interaction
ENSG00000131779	Chromatin interaction
ENSG00000211451	Chromatin interaction
ENSG00000234222	Chromatin interaction

Extended variants
information (count: 85 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:1)

rs_ID	r²[population]
rs72701898	0.80[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:84 , 50 per page) page: 1 2

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1005055	chr1:144893406-145792052	Flanking Bivalent TSS/Enh Weak transcription Enhancers Flanking Active TSS Transcr. at gene 5' and 3' Active TSS Bivalent Enhancer Genic enhancers Strong transcription Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	381 gene(s)	inside rSNPs	diseases
2	nsv432720	chr1:144956393-145727683	Enhancers Genic enhancers Active TSS Weak transcription Strong transcription Transcr. at gene 5' and 3' Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	363 gene(s)	inside rSNPs	diseases
3	nsv998771	chr1:144986365-145687024	Enhancers Flanking Active TSS Weak transcription Bivalent Enhancer Active TSS Strong transcription Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	362 gene(s)	inside rSNPs	diseases
4	nsv535079	chr1:144986365-145687024	Weak transcription Flanking Active TSS Strong transcription Enhancers Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	362 gene(s)	inside rSNPs	diseases
5	nsv933296	chr1:144994945-145740657	Active TSS Weak transcription Flanking Active TSS Enhancers Strong transcription Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	359 gene(s)	inside rSNPs	diseases
6	nsv1000082	chr1:145081821-145687024	Flanking Active TSS Strong transcription Enhancers Transcr. at gene 5' and 3' Weak transcription Bivalent/Poised TSS Active TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	347 gene(s)	inside rSNPs	diseases
7	nsv535081	chr1:145081821-145687024	Enhancers Flanking Active TSS Transcr. at gene 5' and 3' Strong transcription Weak transcription Active TSS Bivalent/Poised TSS Bivalent Enhancer Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	347 gene(s)	inside rSNPs	diseases
8	nsv1013638	chr1:145172973-146012524	Weak transcription Enhancers Flanking Active TSS Active TSS Bivalent/Poised TSS Strong transcription Genic enhancers ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	339 gene(s)	inside rSNPs	diseases
9	esv2422428	chr1:145259792-145609308	Genic enhancers Weak transcription Enhancers Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Strong transcription ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	308 gene(s)	inside rSNPs	diseases
10	nsv1002731	chr1:145276259-145792052	Weak transcription Active TSS Strong transcription Enhancers Flanking Bivalent TSS/Enh Genic enhancers Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	327 gene(s)	inside rSNPs	diseases
11	nsv532247	chr1:145291698-146037042	Enhancers Active TSS Weak transcription Flanking Active TSS Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh Strong transcription Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	335 gene(s)	inside rSNPs	diseases
12	nsv532393	chr1:145304668-145738275	Flanking Active TSS Strong transcription Enhancers Genic enhancers Weak transcription ZNF genes & repeats Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	325 gene(s)	inside rSNPs	diseases
13	nsv532248	chr1:145310253-145899398	Weak transcription Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Enhancers ZNF genes & repeats Strong transcription Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	329 gene(s)	inside rSNPs	diseases
14	nsv872224	chr1:145341400-145900678	Enhancers Genic enhancers Flanking Active TSS Weak transcription Active TSS Transcr. at gene 5' and 3' Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	329 gene(s)	inside rSNPs	diseases
15	nsv948894	chr1:145366695-145727683	Flanking Active TSS Weak transcription Active TSS Enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	323 gene(s)	inside rSNPs	diseases
16	nsv432731	chr1:145366956-145727956	Genic enhancers Enhancers Active TSS ZNF genes & repeats Flanking Active TSS Strong transcription Weak transcription Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	323 gene(s)	inside rSNPs	diseases
17	nsv872225	chr1:145367196-145900678	Weak transcription Strong transcription Flanking Active TSS Active TSS Enhancers ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	329 gene(s)	inside rSNPs	diseases
18	nsv918206	chr1:145372550-145792052	Flanking Active TSS Enhancers Weak transcription Active TSS Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	326 gene(s)	inside rSNPs	diseases
19	nsv918131	chr1:145372550-146012524	Enhancers Genic enhancers Strong transcription Weak transcription Bivalent Enhancer Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	334 gene(s)	inside rSNPs	diseases
20	nsv1007296	chr1:145372551-145792052	Enhancers Weak transcription Strong transcription Active TSS ZNF genes & repeats Genic enhancers Flanking Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	326 gene(s)	inside rSNPs	diseases
21	nsv917908	chr1:145372551-145932457	Genic enhancers Enhancers Weak transcription Active TSS Strong transcription Flanking Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	329 gene(s)	inside rSNPs	diseases
22	esv2761653	chr1:145382124-145932468	Flanking Active TSS Enhancers Weak transcription Active TSS Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	329 gene(s)	inside rSNPs	diseases
23	nsv547654	chr1:145384225-145747463	Weak transcription Genic enhancers Strong transcription Enhancers Bivalent/Poised TSS Bivalent Enhancer Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Active TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	163 gene(s)	inside rSNPs	diseases
24	nsv872228	chr1:145385675-145598459	Weak transcription Enhancers Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers Strong transcription Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	125 gene(s)	inside rSNPs	diseases
25	nsv872229	chr1:145385675-145771576	Flanking Active TSS Active TSS Strong transcription Bivalent/Poised TSS Weak transcription Enhancers Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	144 gene(s)	inside rSNPs	diseases
26	nsv872230	chr1:145385675-145789110	Weak transcription Strong transcription Flanking Active TSS Enhancers Genic enhancers Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	145 gene(s)	inside rSNPs	diseases
27	nsv547655	chr1:145388137-145730160	Active TSS Enhancers Flanking Active TSS Genic enhancers Weak transcription Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	141 gene(s)	inside rSNPs	diseases
28	nsv532396	chr1:145388355-145746971	Enhancers Flanking Active TSS Weak transcription Active TSS Genic enhancers Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	142 gene(s)	inside rSNPs	diseases
29	nsv532400	chr1:145388355-145799602	Bivalent Enhancer Flanking Bivalent TSS/Enh Enhancers Flanking Active TSS Weak transcription Active TSS Genic enhancers Bivalent/Poised TSS Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	143 gene(s)	inside rSNPs	diseases
30	nsv532399	chr1:145388355-145825847	Active TSS Flanking Active TSS Strong transcription Weak transcription Bivalent/Poised TSS Enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	144 gene(s)	inside rSNPs	diseases
31	nsv532398	chr1:145388355-145917640	Active TSS Weak transcription Flanking Active TSS Bivalent/Poised TSS Strong transcription Enhancers Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	146 gene(s)	inside rSNPs	diseases
32	nsv917018	chr1:145388369-145899418	Weak transcription Strong transcription Enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	146 gene(s)	inside rSNPs	diseases
33	nsv1001857	chr1:145388977-145743966	Strong transcription Active TSS Flanking Active TSS Enhancers Weak transcription ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	141 gene(s)	inside rSNPs	diseases
34	nsv997343	chr1:145388977-145746709	Strong transcription Flanking Active TSS Enhancers Weak transcription Genic enhancers Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	141 gene(s)	inside rSNPs	diseases
35	nsv535083	chr1:145388977-145746709	Enhancers Weak transcription Active TSS Transcr. at gene 5' and 3' Flanking Active TSS Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	141 gene(s)	inside rSNPs	diseases
36	nsv1006753	chr1:145391749-145792052	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS Transcr. at gene 5' and 3' Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	142 gene(s)	inside rSNPs	diseases
37	nsv872231	chr1:145394955-145598459	Weak transcription Flanking Active TSS Enhancers Strong transcription ZNF genes & repeats Active TSS Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	121 gene(s)	inside rSNPs	diseases
38	nsv463417	chr1:145394955-145681484	Flanking Active TSS Weak transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Active TSS Strong transcription Enhancers Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	138 gene(s)	inside rSNPs	diseases
39	nsv547656	chr1:145394955-145681484	Genic enhancers Weak transcription Enhancers Bivalent/Poised TSS Bivalent Enhancer Strong transcription Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	138 gene(s)	inside rSNPs	diseases
40	nsv463428	chr1:145394955-145747463	Active TSS Flanking Active TSS Weak transcription Strong transcription Flanking Bivalent TSS/Enh Enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	141 gene(s)	inside rSNPs	diseases
41	nsv463439	chr1:145394955-145747463	Strong transcription Enhancers Flanking Active TSS Weak transcription Genic enhancers Active TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	141 gene(s)	inside rSNPs	diseases
42	nsv547657	chr1:145394955-145747463	Enhancers Active TSS Strong transcription Weak transcription Genic enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	141 gene(s)	inside rSNPs	diseases
43	nsv547658	chr1:145394955-145776593	Bivalent/Poised TSS Genic enhancers Enhancers Transcr. at gene 5' and 3' Active TSS Strong transcription Flanking Active TSS Flanking Bivalent TSS/Enh Weak transcription Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	141 gene(s)	inside rSNPs	diseases
44	nsv547659	chr1:145394955-145780243	Strong transcription Weak transcription Active TSS Bivalent Enhancer Flanking Active TSS Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	141 gene(s)	inside rSNPs	diseases
45	nsv432742	chr1:145395604-145727956	Enhancers Strong transcription Weak transcription Flanking Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Genic enhancers Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	139 gene(s)	inside rSNPs	diseases
46	nsv1011556	chr1:145399902-145743966	Weak transcription Flanking Active TSS Active TSS Enhancers Flanking Bivalent TSS/Enh Genic enhancers Strong transcription Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	137 gene(s)	inside rSNPs	diseases
47	nsv1004250	chr1:145399902-145746709	ZNF genes & repeats Flanking Active TSS Weak transcription Strong transcription Enhancers Active TSS Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	137 gene(s)	inside rSNPs	diseases
48	esv2830397	chr1:145401238-145799743	Flanking Active TSS Enhancers Weak transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Active TSS Strong transcription Genic enhancers ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	138 gene(s)	inside rSNPs	diseases
49	nsv831370	chr1:145401253-145606187	Weak transcription Flanking Active TSS Enhancers Active TSS Strong transcription Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	117 gene(s)	inside rSNPs	diseases
50	nsv1009207	chr1:145402197-145746709	Enhancers Flanking Active TSS Strong transcription Weak transcription Active TSS Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	137 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs11587364	NUDT17,POLR3C,PIAS3	cis	brain	BrainEAC

Chromatin state (count:124 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:145584600-145591400	Weak transcription	Small Intestine	intestine
2	chr1:145588400-145590200	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
3	chr1:145588400-145590200	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Female	--
4	chr1:145588400-145590400	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
5	chr1:145588600-145590200	Flanking Active TSS	Primary neutrophils fromperipheralblood	blood
6	chr1:145589400-145590200	Flanking Active TSS	Primary T cells from cord blood	blood
7	chr1:145589400-145590200	Enhancers	Spleen	Spleen
8	chr1:145589400-145590400	Enhancers	Sigmoid Colon	Sigmoid Colon
9	chr1:145589400-145591800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
10	chr1:145589400-145600800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
11	chr1:145589400-145610200	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
12	chr1:145589600-145590400	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
13	chr1:145589600-145590400	Enhancers	Primary B cells from peripheral blood	blood
14	chr1:145589600-145590400	Flanking Active TSS	Monocytes-CD14+_RO01746	blood
15	chr1:145589600-145591800	Weak transcription	Placenta Amnion	Placenta Amnion
16	chr1:145589800-145590200	Enhancers	Primary T killer memory cells from peripheral blood	blood
17	chr1:145589800-145590200	Active TSS	Foreskin Fibroblast Primary Cells skin02	Skin
18	chr1:145589800-145590200	Enhancers	Ovary	ovary
19	chr1:145589800-145590200	Enhancers	Right Ventricle	heart
20	chr1:145589800-145590200	Flanking Active TSS	Stomach Smooth Muscle	stomach
21	chr1:145589800-145590400	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
22	chr1:145589800-145590400	Enhancers	Fetal Muscle Trunk	muscle
23	chr1:145589800-145590400	Enhancers	Placenta	Placenta
24	chr1:145589800-145590400	Enhancers	Fetal Stomach	stomach
25	chr1:145589800-145590400	Enhancers	Fetal Thymus	thymus
26	chr1:145589800-145590400	Enhancers	Pancreas	Pancrea
27	chr1:145589800-145590600	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
28	chr1:145589800-145590800	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
29	chr1:145589800-145591200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
30	chr1:145589800-145591200	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
31	chr1:145589800-145591400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
32	chr1:145589800-145591600	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
33	chr1:145589800-145591800	Weak transcription	H9 Cell Line	embryonic stem cell
34	chr1:145589800-145591800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
35	chr1:145589800-145591800	Weak transcription	Psoas Muscle	Psoas
36	chr1:145589800-145592000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
37	chr1:145589800-145592000	Weak transcription	Lung	lung
38	chr1:145589800-145592400	Weak transcription	Esophagus	oesophagus
39	chr1:145589800-145592400	Weak transcription	Gastric	stomach
40	chr1:145589800-145593400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
41	chr1:145590000-145590200	Enhancers	Breast Myoepithelial Primary Cells	Breast
42	chr1:145590000-145590200	Enhancers	Primary T cells fromperipheralblood	blood
43	chr1:145590000-145590200	Enhancers	Primary T helper naive cells from peripheral blood	blood
44	chr1:145590000-145590200	Enhancers	Primary T helper naive cells fromperipheralblood	blood
45	chr1:145590000-145590200	Enhancers	Primary T helper cells PMA-I stimulated	--
46	chr1:145590000-145590200	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
47	chr1:145590000-145590200	Enhancers	Primary T regulatory cells fromperipheralblood	blood
48	chr1:145590000-145590200	Enhancers	Primary T cells effector/memory enriched fromperipheralblood	blood
49	chr1:145590000-145590200	Enhancers	Primary T killer naive cells fromperipheralblood	blood
50	chr1:145590000-145590200	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin

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