Variant report

Variant	rs11587898
Chromosome Location	chr1:160823826-160823827
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr1:160815023..160816835-chr1:160823211..160824951,2	K562	blood:
2	chr1:160822600..160825606-chr1:160827669..160829423,3	K562	blood:

Extended variants
information (count: 33 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:29)

rs_ID	r²[population]
rs11265493	0.83[CEU][hapmap];0.80[AMR][1000 genomes]
rs11265496	1.00[CEU][hapmap];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11582719	1.00[CEU][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1319651	1.00[CEU][hapmap];0.89[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2139660	0.84[CEU][hapmap]
rs2280415	0.96[CEU][hapmap];0.86[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs2779790	1.00[CEU][hapmap];0.98[EUR][1000 genomes]
rs2779792	0.91[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2990702	0.97[EUR][1000 genomes]
rs2990703	1.00[CEU][hapmap];0.92[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs3753389	0.96[CEU][hapmap];0.94[EUR][1000 genomes]
rs3766379	0.96[CEU][hapmap];0.95[EUR][1000 genomes]
rs4656937	0.96[CEU][hapmap];0.94[EUR][1000 genomes]
rs4656938	0.96[CEU][hapmap];0.96[EUR][1000 genomes]
rs483197	0.98[EUR][1000 genomes]
rs489651	1.00[CEU][hapmap];0.96[EUR][1000 genomes]
rs491061	0.96[CEU][hapmap];1.00[YRI][hapmap];0.99[AFR][1000 genomes];0.92[AMR][1000 genomes];0.92[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs499721	0.85[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs512525	1.00[CEU][hapmap];0.80[YRI][hapmap];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs535610	1.00[CEU][hapmap];1.00[YRI][hapmap];0.97[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs536906	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs537957	0.99[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs541834	0.97[EUR][1000 genomes]
rs549565	0.95[CEU][hapmap];0.97[EUR][1000 genomes]
rs578608	0.96[AFR][1000 genomes];0.96[AMR][1000 genomes];0.95[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs60755678	0.91[EUR][1000 genomes]
rs6671710	1.00[CEU][hapmap];0.83[YRI][hapmap];0.87[AFR][1000 genomes];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6682654	1.00[CEU][hapmap];0.83[YRI][hapmap];0.87[AFR][1000 genomes];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7518342	0.84[CEU][hapmap];0.82[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv1822379	chr1:160545332-160831143	Enhancers Active TSS Flanking Active TSS Weak transcription Transcr. at gene 5' and 3' ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	23 gene(s)	inside rSNPs	diseases
2	nsv464161	chr1:160747615-160852046	Enhancers Weak transcription Strong transcription ZNF genes & repeats Flanking Active TSS Active TSS Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
3	nsv548057	chr1:160747615-160852046	Weak transcription Genic enhancers Enhancers Transcr. at gene 5' and 3' Strong transcription ZNF genes & repeats Active TSS Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
4	nsv946456	chr1:160812650-160824679	Enhancers Weak transcription Strong transcription ZNF genes & repeats Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs11587898	CD244	Cis_1M	lymphoblastoid	RTeQTL

Chromatin state (count:17 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:160811800-160824600	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
2	chr1:160812800-160824200	Weak transcription	Thymus	Thymus
3	chr1:160817800-160825400	Genic enhancers	Primary Natural Killer cells fromperipheralblood	blood
4	chr1:160821000-160824000	Weak transcription	Primary T killer memory cells from peripheral blood	blood
5	chr1:160821000-160828200	Weak transcription	Duodenum Mucosa	Duodenum
6	chr1:160821000-160830800	Weak transcription	Spleen	Spleen
7	chr1:160821200-160825200	Weak transcription	Fetal Intestine Small	intestine
8	chr1:160821600-160828000	Weak transcription	Fetal Intestine Large	intestine
9	chr1:160822400-160825400	Strong transcription	Monocytes-CD14+_RO01746	blood
10	chr1:160822400-160825800	Strong transcription	Primary monocytes fromperipheralblood	blood
11	chr1:160823000-160829000	Enhancers	Primary T killer naive cells fromperipheralblood	blood
12	chr1:160823200-160824600	Genic enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
13	chr1:160823200-160824800	Enhancers	Primary hematopoietic stem cells	blood
14	chr1:160823200-160825000	Genic enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
15	chr1:160823400-160824800	Genic enhancers	Primary hematopoietic stem cells short term culture	blood
16	chr1:160823400-160826200	Enhancers	Primary T cells fromperipheralblood	blood
17	chr1:160823600-160826200	Enhancers	Fetal Thymus	thymus

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