The 2.0 version of rSNPBase

Variant report

Variant rs11588603
Chromosome Location chr1:224368977-224368978
allele A/C
Outlinks Ensembl   UCSC
Chromatin state (count:43 , 50 per page) page: 1
No. Chromosome Location Chromatin state Cell line Tissue
1 chr1:224346400-224370000 Weak transcription Esophagus oesophagus
2 chr1:224359000-224369200 Weak transcription Primary T helper naive cells from peripheral blood blood
3 chr1:224359000-224369200 Weak transcription Primary T helper cells PMA-I stimulated --
4 chr1:224359000-224370200 Weak transcription Small Intestine intestine
5 chr1:224362800-224369600 Weak transcription Fetal Intestine Small intestine
6 chr1:224363400-224369600 Weak transcription Fetal Intestine Large intestine
7 chr1:224363400-224370000 Weak transcription HUES48 Cell Line embryonic stem cell
8 chr1:224363600-224370000 Weak transcription HMEC breast
9 chr1:224363800-224369000 Weak transcription Primary B cells from peripheral blood blood
10 chr1:224363800-224369600 Weak transcription Thymus Thymus
11 chr1:224363800-224369800 Weak transcription H1 Derived Mesenchymal Stem Cells ES cell derived
12 chr1:224363800-224369800 Weak transcription Brain Dorsolateral Prefrontal Cortex brain
13 chr1:224363800-224369800 Weak transcription Duodenum Smooth Muscle Duodenum
14 chr1:224363800-224369800 Weak transcription Stomach Smooth Muscle stomach
15 chr1:224363800-224369800 Weak transcription Monocytes-CD14+_RO01746 blood
16 chr1:224363800-224370000 Weak transcription Ganglion Eminence derived primary cultured neurospheres brain
17 chr1:224363800-224370000 Weak transcription Foreskin Fibroblast Primary Cells skin02 Skin
18 chr1:224363800-224370000 Weak transcription Brain Anterior Caudate brain
19 chr1:224363800-224370200 Weak transcription H1 Cell Line embryonic stem cell
20 chr1:224363800-224370200 Weak transcription iPS DF 6.9 Cell Line embryonic stem cell
21 chr1:224363800-224370200 Weak transcription Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells embryonic stem cell
22 chr1:224363800-224370200 Weak transcription Brain Hippocampus Middle brain
23 chr1:224363800-224370200 Weak transcription Brain Substantia Nigra brain
24 chr1:224363800-224370400 Weak transcription Lung lung
25 chr1:224364600-224369200 Weak transcription Placenta Placenta
26 chr1:224366400-224370000 Weak transcription Mesenchymal Stem Cell Derived Adipocyte Cultured Cells ES cell derived
27 chr1:224366400-224370000 Weak transcription Osteobl bone
28 chr1:224367200-224370000 Weak transcription NH-A brain
29 chr1:224368000-224369000 Weak transcription Primary Natural Killer cells fromperipheralblood blood
30 chr1:224368000-224370000 Enhancers Fetal Thymus thymus
31 chr1:224368200-224369800 Weak transcription Skeletal Muscle Male skeletal muscle
32 chr1:224368400-224369200 Flanking Active TSS Foreskin Keratinocyte Primary Cells skin02 Skin
33 chr1:224368400-224369600 Enhancers Breast Myoepithelial Primary Cells Breast
34 chr1:224368600-224369000 Active TSS HepG2 liver
35 chr1:224368600-224369600 Enhancers Primary neutrophils fromperipheralblood blood
36 chr1:224368600-224369600 Enhancers NHEK skin
37 chr1:224368600-224369800 Enhancers Duodenum Mucosa Duodenum
38 chr1:224368600-224370400 Enhancers iPS DF 19.11 Cell Line embryonic stem cell
39 chr1:224368800-224369000 Weak transcription ES-UCSF4 Cell Line embryonic stem cell
40 chr1:224368800-224369000 Enhancers Foreskin Keratinocyte Primary Cells skin03 Skin
41 chr1:224368800-224369800 Enhancers Primary B cells from cord blood blood
42 chr1:224368800-224370000 Enhancers ES-I3 Cell Line embryonic stem cell
43 chr1:224368800-224370200 Weak transcription Adipose Derived Mesenchymal Stem Cell Cultured Cells ES cell derived

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Last update: Aug 31, 2015