Variant report

Variant	rs11588804
Chromosome Location	chr1:58120489-58120490
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 22 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:19)

rs_ID	r²[population]
rs11207077	0.90[CHB][hapmap]
rs11207081	0.87[CHB][hapmap]
rs11578358	0.90[CHB][hapmap]
rs12022839	0.91[CHB][hapmap]
rs12029004	0.90[CHB][hapmap]
rs12038397	0.91[CHB][hapmap]
rs12045520	0.80[CHB][hapmap]
rs12046948	0.90[CHB][hapmap]
rs12079319	0.90[CHB][hapmap]
rs12085345	1.00[CEU][hapmap];1.00[CHB][hapmap];0.86[JPT][hapmap];0.81[AMR][1000 genomes];0.91[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs12136116	0.84[CHB][hapmap]
rs1404384	0.90[CHB][hapmap]
rs1524707	0.90[CHB][hapmap]
rs1539053	0.90[CHB][hapmap]
rs1983454	0.91[CHB][hapmap]
rs4912271	0.91[CHB][hapmap]
rs7544337	0.91[CHB][hapmap]
rs7548317	0.90[CHB][hapmap]
rs7548624	0.90[CHB][hapmap]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv817216	chr1:57801783-58130775	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
2	nsv1015057	chr1:57976993-58793962	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
3	nsv530017	chr1:58002290-58669736	Enhancers Weak transcription Flanking Active TSS Active TSS Genic enhancers Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:0 , 50 per page) page:

No data

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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