Variant report

Variant	rs115894232
Chromosome Location	chr1:10854446-10854447
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr1:10739929..10741898-chr1:10854079..10856532,2	MCF-7	breast:
2	chr1:10712004..10714801-chr1:10852157..10855382,3	MCF-7	breast:
3	chr1:10838788..10840629-chr1:10854389..10855939,2	MCF-7	breast:
4	chr1:10750259..10753196-chr1:10853460..10855878,3	MCF-7	breast:
5	chr1:10854264..10855791-chr1:10891105..10892781,2	MCF-7	breast:
6	chr1:10852601..10855720-chr1:10959417..10961902,3	MCF-7	breast:
7	chr1:10841137..10843114-chr1:10851742..10854578,2	MCF-7	breast:

Extended variants
information (count: 9 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:9 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv29966	chr1:10676800-10874152	Weak transcription Bivalent Enhancer Strong transcription Flanking Active TSS Flanking Bivalent TSS/Enh Enhancers Active TSS Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
2	nsv870849	chr1:10694125-10894724	Active TSS Bivalent Enhancer Enhancers Flanking Bivalent TSS/Enh Weak transcription Strong transcription Flanking Active TSS Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
3	nsv529981	chr1:10697093-11353487	Weak transcription Enhancers Strong transcription Bivalent Enhancer Genic enhancers Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	68 gene(s)	inside rSNPs	diseases
4	nsv832314	chr1:10704811-10859919	Enhancers Weak transcription Bivalent Enhancer Genic enhancers Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Strong transcription Active TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
5	esv2757723	chr1:10742502-11055147	Weak transcription Bivalent Enhancer Enhancers Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent/Poised TSS Genic enhancers Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	21 gene(s)	inside rSNPs	diseases
6	esv2758921	chr1:10742502-11055147	Enhancers Flanking Active TSS Bivalent Enhancer Weak transcription Active TSS Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	21 gene(s)	inside rSNPs	diseases
7	nsv871772	chr1:10832322-10894724	Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Weak transcription Enhancers Genic enhancers Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
8	nsv870589	chr1:10840905-10901994	Enhancers Weak transcription Bivalent Enhancer Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
9	esv3353550	chr1:10853540-10857138	Flanking Bivalent TSS/Enh Bivalent/Poised TSS Active TSS Bivalent Enhancer Flanking Active TSS Weak transcription Transcr. at gene 5' and 3' Enhancers	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:108 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:10853000-10857200	Active TSS	Pancreatic Islets	Pancreatic Islet
2	chr1:10853200-10856200	Bivalent Enhancer	Primary T helper cells fromperipheralblood	blood
3	chr1:10853200-10856200	Bivalent/Poised TSS	Duodenum Smooth Muscle	Duodenum
4	chr1:10853200-10857000	Bivalent/Poised TSS	ES-I3 Cell Line	embryonic stem cell
5	chr1:10853200-10857000	Active TSS	Duodenum Mucosa	Duodenum
6	chr1:10853200-10857000	Active TSS	Psoas Muscle	Psoas
7	chr1:10853200-10857200	Bivalent/Poised TSS	HUES48 Cell Line	embryonic stem cell
8	chr1:10853200-10857200	Flanking Bivalent TSS/Enh	Primary hematopoietic stem cells G-CSF-mobilized Male	--
9	chr1:10853400-10854600	Bivalent Enhancer	Primary T cells effector/memory enriched fromperipheralblood	blood
10	chr1:10853400-10854800	Flanking Bivalent TSS/Enh	H9 Derived Neuron Cultured Cells	ES cell derived
11	chr1:10853400-10854800	Bivalent Enhancer	Primary T killer naive cells fromperipheralblood	blood
12	chr1:10853400-10855200	Active TSS	Colon Smooth Muscle	Colon
13	chr1:10853400-10855600	Enhancers	Primary T helper naive cells from peripheral blood	blood
14	chr1:10853400-10856000	Bivalent/Poised TSS	H9 Cell Line	embryonic stem cell
15	chr1:10853400-10856000	Flanking Bivalent TSS/Enh	Primary hematopoietic stem cells G-CSF-mobilized Female	--
16	chr1:10853400-10856400	Flanking Bivalent TSS/Enh	Fetal Adrenal Gland	Adrenal Gland
17	chr1:10853400-10856600	Bivalent Enhancer	Primary T helper memory cells from peripheral blood 1	blood
18	chr1:10853400-10856800	Active TSS	Esophagus	oesophagus
19	chr1:10853400-10856800	Active TSS	Left Ventricle	heart
20	chr1:10853400-10856800	Active TSS	Right Atrium	heart
21	chr1:10853400-10857000	Bivalent/Poised TSS	iPS-18 Cell Line	embryonic stem cell
22	chr1:10853400-10857200	Bivalent/Poised TSS	iPS-20b Cell Line	embryonic stem cell
23	chr1:10853600-10854600	Flanking Bivalent TSS/Enh	Primary hematopoietic stem cells	blood
24	chr1:10853600-10854800	Bivalent/Poised TSS	HSMM	muscle
25	chr1:10853600-10855400	Active TSS	Fetal Kidney	kidney
26	chr1:10853600-10856800	Active TSS	Breast Myoepithelial Primary Cells	Breast
27	chr1:10853600-10856800	Active TSS	Aorta	Aorta
28	chr1:10853600-10856800	Active TSS	HSMMtube	muscle
29	chr1:10853600-10857000	Bivalent/Poised TSS	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
30	chr1:10853600-10857000	Active TSS	Rectal Mucosa Donor 31	rectum
31	chr1:10853600-10857000	Bivalent/Poised TSS	Thymus	Thymus
32	chr1:10853600-10857200	Bivalent/Poised TSS	HUES64 Cell Line	embryonic stem cell
33	chr1:10853600-10857200	Bivalent Enhancer	Fetal Brain Male	brain
34	chr1:10853800-10854600	Flanking Bivalent TSS/Enh	Brain Hippocampus Middle	brain
35	chr1:10853800-10854600	Flanking Bivalent TSS/Enh	Sigmoid Colon	Sigmoid Colon
36	chr1:10853800-10854800	Flanking Bivalent TSS/Enh	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
37	chr1:10853800-10854800	Bivalent Enhancer	IMR90 fetal lung fibroblasts Cell Line	lung
38	chr1:10853800-10854800	Flanking Bivalent TSS/Enh	ES-UCSF4 Cell Line	embryonic stem cell
39	chr1:10853800-10854800	Flanking Bivalent TSS/Enh	Foreskin Melanocyte Primary Cells skin03	Skin
40	chr1:10853800-10854800	Flanking Bivalent TSS/Enh	Fetal Brain Female	brain
41	chr1:10853800-10854800	Flanking Bivalent TSS/Enh	NHEK	skin
42	chr1:10853800-10855000	Flanking Bivalent TSS/Enh	Adipose Nuclei	Adipose
43	chr1:10853800-10855400	Bivalent/Poised TSS	Small Intestine	intestine
44	chr1:10853800-10855400	Bivalent/Poised TSS	HepG2	liver
45	chr1:10853800-10855600	Flanking Bivalent TSS/Enh	Foreskin Keratinocyte Primary Cells skin03	Skin
46	chr1:10853800-10855600	Flanking Bivalent TSS/Enh	Brain Germinal Matrix	brain
47	chr1:10853800-10855800	Bivalent Enhancer	Placenta Amnion	Placenta Amnion
48	chr1:10853800-10856000	Flanking Bivalent TSS/Enh	Cortex derived primary cultured neurospheres	brain
49	chr1:10853800-10856000	Flanking Active TSS	Liver	Liver
50	chr1:10853800-10856400	Flanking Bivalent TSS/Enh	Foreskin Fibroblast Primary Cells skin01	Skin

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links