Variant report

Variant	rs11589433
Chromosome Location	chr1:225922159-225922160
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr1:225839526..225841681-chr1:225921806..225923361,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000154380	Chromatin interaction

Extended variants
information (count: 18 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs10915864	0.88[ASN][1000 genomes]
rs10915865	0.90[ASN][1000 genomes]
rs10915866	0.96[ASN][1000 genomes]
rs10915868	0.97[ASN][1000 genomes]
rs12076509	0.95[ASN][1000 genomes]
rs12077115	0.95[ASN][1000 genomes]
rs12081218	0.95[ASN][1000 genomes]
rs4653429	0.96[ASN][1000 genomes]
rs4653655	0.94[ASN][1000 genomes]
rs4653660	1.00[ASN][1000 genomes]
rs4653662	0.94[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4653663	0.94[EUR][1000 genomes]
rs7521999	0.88[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832736	chr1:225815717-225968619	Enhancers Weak transcription Flanking Active TSS Active TSS Genic enhancers Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	29 gene(s)	inside rSNPs	diseases
2	esv1795046	chr1:225874059-226091150	Weak transcription Flanking Active TSS Active TSS Enhancers Strong transcription Genic enhancers Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	40 gene(s)	inside rSNPs	diseases
3	esv1834932	chr1:225874059-226091150	Enhancers Weak transcription Flanking Active TSS Strong transcription Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	40 gene(s)	inside rSNPs	diseases
4	esv1834948	chr1:225874059-226214882	Weak transcription Enhancers Strong transcription Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	60 gene(s)	inside rSNPs	diseases
5	nsv525391	chr1:225912620-225928538	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:24 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:225912400-225924200	Weak transcription	Spleen	Spleen
2	chr1:225915200-225933600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
3	chr1:225919200-225923000	Weak transcription	Stomach Smooth Muscle	stomach
4	chr1:225919400-225923000	Weak transcription	Osteobl	bone
5	chr1:225919600-225922800	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
6	chr1:225921000-225922400	Enhancers	Hela-S3	cervix
7	chr1:225921400-225922200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
8	chr1:225921400-225922800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
9	chr1:225921400-225922800	Weak transcription	Skeletal Muscle Male	skeletal muscle
10	chr1:225921400-225923000	Weak transcription	Fetal Stomach	stomach
11	chr1:225921400-225923000	Weak transcription	Psoas Muscle	Psoas
12	chr1:225921400-225923000	Weak transcription	HepG2	liver
13	chr1:225921400-225925600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
14	chr1:225921400-225934400	Weak transcription	Esophagus	oesophagus
15	chr1:225921600-225922800	Weak transcription	Fetal Lung	lung
16	chr1:225921600-225923000	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
17	chr1:225921600-225923000	Weak transcription	Fetal Heart	heart
18	chr1:225921600-225923000	Weak transcription	A549	lung
19	chr1:225921800-225922800	Weak transcription	Liver	Liver
20	chr1:225921800-225923000	Weak transcription	Fetal Muscle Trunk	muscle
21	chr1:225921800-225923000	Weak transcription	Right Atrium	heart
22	chr1:225921800-225923200	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
23	chr1:225922000-225923200	Weak transcription	Cortex derived primary cultured neurospheres	brain
24	chr1:225922000-225923200	Weak transcription	Brain Germinal Matrix	brain

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