Variant report

Variant	rs11589877
Chromosome Location	chr1:144988936-144988937
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	RFX5	chr1:144988780-144990016	HepG2	liver:	n/a	n/a
2	NR2F2	chr1:144987107-144990218	MCF-7	breast:	n/a	chr1:144989283-144989298
3	MAFK	chr1:144988745-144989827	HepG2	liver:	n/a	chr1:144988922-144988937
4	HDAC2	chr1:144988730-144990059	MCF-7	breast:	n/a	n/a
5	GATA1	chr1:144987806-144988975	PBDEFetal	blood:	n/a	chr1:144988840-144988850
6	CEBPB	chr1:144988900-144990137	ECC-1	luminal epithelium:	n/a	chr1:144989654-144989665 chr1:144989654-144989665 chr1:144989655-144989666
7	ZZZ3	chr1:144988691-144989269	Hela-S3	cervix:	n/a	n/a
8	EP300	chr1:144988772-144990060	ECC-1	luminal epithelium:	n/a	chr1:144988786-144988800 chr1:144989362-144989376 chr1:144989363-144989371 chr1:144989652-144989666
9	TCF7L2	chr1:144988816-144989900	MCF-7	breast:	n/a	n/a
10	TEAD4	chr1:144987135-144996832	K562	blood:	n/a	n/a
11	ARID3A	chr1:144988785-144990011	HepG2	liver:	n/a	n/a
12	GATA3	chr1:144987816-144990200	MCF-7	breast:	n/a	chr1:144989435-144989442 chr1:144988840-144988850
13	MYC	chr1:144988904-144989966	MCF10A-Er-Src	breast:	n/a	n/a
14	STAT5A	chr1:144987263-144991366	K562	blood:	n/a	chr1:144989674-144989681 chr1:144987975-144987987 chr1:144989474-144989485 chr1:144988785-144988796
15	RAD21	chr1:144988796-144990202	MCF-7	breast:	n/a	n/a
16	MAZ	chr1:144988923-144990076	K562	blood:	n/a	n/a
17	MAFK	chr1:144988759-144990017	IMR90	lung:	n/a	chr1:144988922-144988937
18	GATA3	chr1:144987989-144990332	MCF-7	breast:	n/a	chr1:144989435-144989442 chr1:144988840-144988850
19	GATA3	chr1:144988459-144989123	SH-SY5Y	brain:	n/a	chr1:144988840-144988850
20	ATF1	chr1:144988840-144990055	K562	blood:	n/a	n/a
21	NFYA	chr1:144987804-144989040	GM12878	blood:	n/a	chr1:144988586-144988596
22	CEBPB	chr1:144988766-144990135	MCF-7	breast:	n/a	chr1:144989654-144989665 chr1:144989654-144989665 chr1:144989655-144989666
23	MAX	chr1:144988914-144990087	ECC-1	luminal epithelium:	n/a	n/a
24	TEAD4	chr1:144988723-144990122	ECC-1	luminal epithelium:	n/a	n/a
25	JUN	chr1:144988698-144990329	K562	blood:	n/a	chr1:144989782-144989790 chr1:144989362-144989375
26	RPC155	chr1:144988748-144989588	Hela-S3	cervix:	n/a	n/a
27	CUX1	chr1:144987869-144991282	K562	blood:	n/a	n/a
28	IRF1	chr1:144988119-144990934	K562	blood:	n/a	chr1:144989472-144989486 chr1:144989256-144989263 chr1:144988784-144988801 chr1:144989473-144989486 chr1:144988786-144988797 chr1:144989473-144989487 chr1:144988783-144988797 chr1:144989457-144989467 chr1:144989116-144989128 chr1:144990343-144990353 chr1:144989457-144989471 chr1:144988784-144988798
29	NFIC	chr1:144988847-144990122	ECC-1	luminal epithelium:	n/a	n/a
30	IKZF1	chr1:144988490-144989174	GM12878	blood:	n/a	n/a
31	E2F4	chr1:144988925-144990178	MCF10A-Er-Src	breast:	n/a	n/a
32	HDAC2	chr1:144987943-144990154	MCF-7	breast:	n/a	n/a
33	NR2F2	chr1:144987793-144990557	MCF-7	breast:	n/a	chr1:144989283-144989298
34	ZNF274	chr1:144987821-144990451	K562	blood:	n/a	n/a
35	MAFF	chr1:144988521-144990095	K562	blood:	n/a	chr1:144988920-144988938
36	JUN	chr1:144988700-144989841	HepG2	liver:	n/a	chr1:144989782-144989790 chr1:144989362-144989375
37	MAFK	chr1:144988751-144989909	HepG2	liver:	n/a	chr1:144988922-144988937
38	ZC3H11A	chr1:144988392-144990220	K562	blood:	n/a	n/a
39	ELF1	chr1:144988903-144990156	MCF-7	breast:	n/a	chr1:144989668-144989681
40	FAM48A	chr1:144988076-144990834	GM12878	blood:	n/a	n/a
41	ELF1	chr1:144987780-144990250	MCF-7	breast:	n/a	chr1:144989668-144989681
42	KAT2A	chr1:144988856-144989682	GM12878	blood:	n/a	n/a
43	NR2F2	chr1:144988877-145001064	K562	blood:	n/a	chr1:144989283-144989298
44	RFX5	chr1:144988865-144989993	Hela-S3	cervix:	n/a	n/a
45	UBTF	chr1:144988500-144990066	K562	blood:	n/a	n/a
46	TCF12	chr1:144988843-144990113	ECC-1	luminal epithelium:	n/a	chr1:144989596-144989604
47	MAFK	chr1:144988079-144990137	K562	blood:	n/a	chr1:144988922-144988937
48	GATA3	chr1:144988479-144991089	MCF-7	breast:	n/a	chr1:144989435-144989442 chr1:144988840-144988850
49	MAFF	chr1:144988525-144990047	HepG2	liver:	n/a	chr1:144988920-144988938
50	TCF7L2	chr1:144987944-144989143	HepG2	liver:	n/a	n/a

No.	Distal block	Cell Line	Cell type
1	chr1:144530771..144535863-chr1:144988447..145007040,21	K562	blood:
2	chr1:144530904..144535858-chr1:144986921..144991934,7	K562	blood:
3	chr1:144988088..144989012-chr1:145058100..145059991,5	MCF-7	breast:
4	chr1:144929876..144935601-chr1:144987785..144996108,12	MCF-7	breast:
5	chr1:144988330..144990331-chr1:145096274..145097862,2	MCF-7	breast:
6	chr1:144987747..144991931-chr1:145038647..145042138,3	MCF-7	breast:
7	chr1:144988447..144988982-chr1:145009629..145010133,2	K562	blood:
8	chr1:144930877..144933652-chr1:144988569..144991245,4	MCF-7	breast:

Variant related genes	Relation type
ENSG00000268172	TF binding region
ENSG00000178104	Chromatin interaction
ENSG00000223380	Chromatin interaction
ENSG00000201699	Chromatin interaction

Extended variants
information (count: 104 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:1)

rs_ID	r²[population]
rs2863344	1.00[CHB][hapmap];1.00[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:103 , 50 per page) page: 1 2 3

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv1828275	chr1:144274482-145098718	Enhancers Weak transcription Flanking Bivalent TSS/Enh Strong transcription Bivalent Enhancer Active TSS Flanking Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	304 gene(s)	inside rSNPs	diseases
2	nsv1001693	chr1:144471974-145290292	Enhancers Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer Weak transcription Genic enhancers Flanking Active TSS Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	311 gene(s)	inside rSNPs	diseases
3	esv1830469	chr1:144679113-145320996	Active TSS Strong transcription Flanking Active TSS Enhancers Weak transcription Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	76 gene(s)	inside rSNPs	diseases
4	nsv872212	chr1:144850451-145073750	Strong transcription Weak transcription Enhancers Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	48 gene(s)	inside rSNPs	diseases
5	nsv872213	chr1:144865454-145033984	Strong transcription Enhancers Transcr. at gene 5' and 3' Active TSS Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	43 gene(s)	inside rSNPs	diseases
6	nsv1005230	chr1:144865627-145151820	Weak transcription Strong transcription Enhancers Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Active TSS Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	66 gene(s)	inside rSNPs	diseases
7	esv1828244	chr1:144865627-145243316	Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Weak transcription Enhancers Strong transcription Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	73 gene(s)	inside rSNPs	diseases
8	nsv469838	chr1:144869935-145009137	Weak transcription Strong transcription Genic enhancers Active TSS Flanking Active TSS Enhancers Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	42 gene(s)	inside rSNPs	diseases
9	nsv482650	chr1:144869935-145009137	Active TSS Flanking Active TSS Weak transcription Enhancers Flanking Bivalent TSS/Enh Strong transcription Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	42 gene(s)	inside rSNPs	diseases
10	nsv471603	chr1:144869936-145009137	Weak transcription Genic enhancers Enhancers Strong transcription Active TSS Transcr. at gene 5' and 3' Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	42 gene(s)	inside rSNPs	diseases
11	esv2753760	chr1:144873327-145041016	Flanking Bivalent TSS/Enh Enhancers Weak transcription Active TSS Flanking Active TSS Genic enhancers Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	43 gene(s)	inside rSNPs	diseases
12	esv2753260	chr1:144873327-145129144	Weak transcription Enhancers Active TSS Bivalent Enhancer Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	64 gene(s)	inside rSNPs	diseases
13	nsv872214	chr1:144875799-145195645	Bivalent/Poised TSS Enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Weak transcription Genic enhancers Strong transcription Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	66 gene(s)	inside rSNPs	diseases
14	nsv821620	chr1:144885908-145095806	Active TSS Flanking Active TSS Enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Weak transcription Genic enhancers Strong transcription Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	49 gene(s)	inside rSNPs	diseases
15	nsv999753	chr1:144887881-144991278	Strong transcription Weak transcription Enhancers Genic enhancers Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	30 gene(s)	inside rSNPs	diseases
16	esv2753261	chr1:144889465-145041016	Genic enhancers Enhancers Weak transcription Active TSS Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	39 gene(s)	inside rSNPs	diseases
17	nsv1005055	chr1:144893406-145792052	Flanking Bivalent TSS/Enh Weak transcription Enhancers Flanking Active TSS Transcr. at gene 5' and 3' Active TSS Bivalent Enhancer Genic enhancers Strong transcription Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	381 gene(s)	inside rSNPs	diseases
18	nsv872216	chr1:144894697-145041251	Flanking Active TSS Active TSS Enhancers Weak transcription Genic enhancers Strong transcription Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	39 gene(s)	inside rSNPs	diseases
19	esv1824264	chr1:144902232-145098718	Enhancers Active TSS Flanking Bivalent TSS/Enh Genic enhancers Weak transcription Strong transcription Flanking Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	55 gene(s)	inside rSNPs	diseases
20	esv1828303	chr1:144902232-145098718	Enhancers Flanking Bivalent TSS/Enh Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS Genic enhancers Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	55 gene(s)	inside rSNPs	diseases
21	esv1831542	chr1:144902232-145098718	Flanking Active TSS Enhancers Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Active TSS Strong transcription Genic enhancers ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	55 gene(s)	inside rSNPs	diseases
22	esv1843292	chr1:144902232-145098718	Enhancers Strong transcription Weak transcription Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	55 gene(s)	inside rSNPs	diseases
23	esv1850612	chr1:144902232-145098718	Enhancers Strong transcription Weak transcription Genic enhancers Flanking Active TSS Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	55 gene(s)	inside rSNPs	diseases
24	esv1819879	chr1:144902232-145287810	Flanking Active TSS Weak transcription Enhancers Active TSS Genic enhancers Strong transcription Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	67 gene(s)	inside rSNPs	diseases
25	esv1822839	chr1:144902232-145393578	Flanking Active TSS Enhancers Weak transcription Active TSS Genic enhancers Transcr. at gene 5' and 3' Strong transcription ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	266 gene(s)	inside rSNPs	diseases
26	esv1826561	chr1:144902232-145393578	Weak transcription Enhancers Strong transcription Flanking Active TSS Genic enhancers Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	266 gene(s)	inside rSNPs	diseases
27	esv1849727	chr1:144902232-145393578	Weak transcription Enhancers Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	266 gene(s)	inside rSNPs	diseases
28	nsv870419	chr1:144912330-145113174	Weak transcription Active TSS Enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent Enhancer Strong transcription ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	57 gene(s)	inside rSNPs	diseases
29	nsv1014405	chr1:144914802-145041053	Weak transcription Enhancers Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Strong transcription Bivalent Enhancer Genic enhancers ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	37 gene(s)	inside rSNPs	diseases
30	nsv1013214	chr1:144914802-145069306	Active TSS Weak transcription Bivalent Enhancer Flanking Active TSS Enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Strong transcription Genic enhancers ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	41 gene(s)	inside rSNPs	diseases
31	nsv821349	chr1:144916753-145090362	Strong transcription Flanking Bivalent TSS/Enh Weak transcription Active TSS Flanking Active TSS Enhancers Bivalent Enhancer Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	45 gene(s)	inside rSNPs	diseases
32	nsv824365	chr1:144916753-145090362	Active TSS Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Genic enhancers Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	45 gene(s)	inside rSNPs	diseases
33	esv1818887	chr1:144919989-145074925	Flanking Active TSS Weak transcription Enhancers Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	43 gene(s)	inside rSNPs	diseases
34	esv32934	chr1:144920018-145079815	Enhancers Bivalent/Poised TSS Genic enhancers Weak transcription Strong transcription Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	43 gene(s)	inside rSNPs	diseases
35	esv3387252	chr1:144922395-145093993	Enhancers Active TSS Flanking Active TSS Weak transcription Strong transcription ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	45 gene(s)	inside rSNPs	diseases
36	esv1814765	chr1:144923014-145074925	ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers Weak transcription Active TSS Enhancers Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	43 gene(s)	inside rSNPs	diseases
37	esv1820235	chr1:144923014-145087821	Enhancers ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Weak transcription Active TSS Flanking Bivalent TSS/Enh Genic enhancers Strong transcription Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	45 gene(s)	inside rSNPs	diseases
38	esv1805522	chr1:144938320-145104261	Strong transcription Weak transcription Genic enhancers Enhancers Bivalent Enhancer Active TSS Flanking Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	41 gene(s)	inside rSNPs	diseases
39	esv1846928	chr1:144938320-145104261	Enhancers Weak transcription Active TSS Genic enhancers Flanking Active TSS Strong transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	41 gene(s)	inside rSNPs	diseases
40	esv1815206	chr1:144940095-145082961	Bivalent Enhancer Enhancers Weak transcription Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	29 gene(s)	inside rSNPs	diseases
41	esv1815389	chr1:144940855-145080948	Bivalent Enhancer Weak transcription Enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Active TSS Strong transcription Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	29 gene(s)	inside rSNPs	diseases
42	esv1846259	chr1:144941990-145083949	Bivalent/Poised TSS Enhancers Weak transcription Active TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent Enhancer Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	31 gene(s)	inside rSNPs	diseases
43	esv1830107	chr1:144942423-145074925	Enhancers Flanking Active TSS Weak transcription Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription Transcr. at gene 5' and 3' Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	29 gene(s)	inside rSNPs	diseases
44	esv1850767	chr1:144942423-145074925	Weak transcription Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Strong transcription Genic enhancers Active TSS ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	29 gene(s)	inside rSNPs	diseases
45	esv1826390	chr1:144943140-145085418	ZNF genes & repeats Weak transcription Flanking Active TSS Strong transcription Enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	31 gene(s)	inside rSNPs	diseases
46	esv2762189	chr1:144945737-145014990	Strong transcription Weak transcription Enhancers Flanking Active TSS Genic enhancers Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	20 gene(s)	inside rSNPs	diseases
47	esv1815951	chr1:144948280-145078168	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats Active TSS Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	27 gene(s)	inside rSNPs	diseases
48	esv1845217	chr1:144948280-145078168	Weak transcription Enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Active TSS Genic enhancers ZNF genes & repeats Flanking Active TSS Strong transcription Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	27 gene(s)	inside rSNPs	diseases
49	esv1826769	chr1:144948280-145088893	Weak transcription Enhancers Bivalent Enhancer Strong transcription Genic enhancers Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	29 gene(s)	inside rSNPs	diseases
50	esv19656	chr1:144948283-145083994	Transcr. at gene 5' and 3' Enhancers Flanking Active TSS Weak transcription Strong transcription Bivalent Enhancer Genic enhancers Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	29 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:90 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:144983000-144989400	Weak transcription	Gastric	stomach
2	chr1:144983000-144989600	Weak transcription	Fetal Muscle Trunk	muscle
3	chr1:144983000-144997600	Weak transcription	Primary T helper naive cells from peripheral blood	blood
4	chr1:144983200-144992000	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
5	chr1:144983400-144989000	Weak transcription	Fetal Lung	lung
6	chr1:144983400-144989200	Weak transcription	Primary hematopoietic stem cells	blood
7	chr1:144983400-144991800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
8	chr1:144983400-144991800	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
9	chr1:144983400-144994000	Weak transcription	H1 Cell Line	embryonic stem cell
10	chr1:144983400-144994200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
11	chr1:144983400-144994200	Weak transcription	iPS-18 Cell Line	embryonic stem cell
12	chr1:144983600-144989000	Weak transcription	NH-A	brain
13	chr1:144983800-144991800	Weak transcription	HUES6 Cell Line	embryonic stem cell
14	chr1:144984600-144989200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
15	chr1:144984800-144989000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
16	chr1:144985000-144989200	Weak transcription	Breast Myoepithelial Primary Cells	Breast
17	chr1:144985000-144989400	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
18	chr1:144985800-144993400	Enhancers	Pancreatic Islets	Pancreatic Islet
19	chr1:144986000-144989000	Genic enhancers	K562	blood
20	chr1:144986600-144989200	Enhancers	Stomach Smooth Muscle	stomach
21	chr1:144986800-144989000	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
22	chr1:144986800-144989200	Genic enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
23	chr1:144987000-144989200	Weak transcription	Colonic Mucosa	Colon
24	chr1:144987000-144989400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
25	chr1:144987000-144989400	Weak transcription	Esophagus	oesophagus
26	chr1:144987000-144993000	Weak transcription	Lung	lung
27	chr1:144987000-144994400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
28	chr1:144987200-144989000	Enhancers	Duodenum Smooth Muscle	Duodenum
29	chr1:144987200-144989400	Enhancers	Colon Smooth Muscle	Colon
30	chr1:144987400-144989000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
31	chr1:144987400-144989000	Weak transcription	NHEK	skin
32	chr1:144987800-144989000	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
33	chr1:144987800-144989000	Enhancers	Fetal Intestine Small	intestine
34	chr1:144987800-144989000	Transcr. at gene 5' and 3'	Skeletal Muscle Female	skeletal muscle
35	chr1:144987800-144989200	Enhancers	Adipose Nuclei	Adipose
36	chr1:144987800-144989200	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
37	chr1:144987800-144989600	Genic enhancers	Fetal Muscle Leg	muscle
38	chr1:144987800-144990400	Enhancers	Small Intestine	intestine
39	chr1:144987800-144991000	Enhancers	Primary monocytes fromperipheralblood	blood
40	chr1:144987800-144991200	Enhancers	Brain Hippocampus Middle	brain
41	chr1:144987800-144991800	Weak transcription	Primary T killer memory cells from peripheral blood	blood
42	chr1:144988000-144989000	Enhancers	Aorta	Aorta
43	chr1:144988000-144989200	Weak transcription	Fetal Brain Male	brain
44	chr1:144988000-144989800	Genic enhancers	Brain Inferior Temporal Lobe	brain
45	chr1:144988000-144989800	Transcr. at gene 5' and 3'	Fetal Heart	heart
46	chr1:144988000-144991000	Enhancers	Brain Substantia Nigra	brain
47	chr1:144988000-144996400	Genic enhancers	Brain Germinal Matrix	brain
48	chr1:144988200-144989000	Genic enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
49	chr1:144988200-144989000	Weak transcription	Fetal Brain Female	brain
50	chr1:144988200-144989400	Active TSS	Right Atrium	heart

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