Variant report

Variant	rs11590437
Chromosome Location	chr1:179730423-179730424
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 3 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:2)

rs_ID	r²[population]
rs11580321	0.89[AMR][1000 genomes]
rs11589737	0.89[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1009961	chr1:179714247-179790110	Enhancers Flanking Active TSS Bivalent Enhancer Active TSS Bivalent/Poised TSS Weak transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:179727800-179731400	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
2	chr1:179729600-179731800	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
3	chr1:179729800-179731800	Enhancers	Fetal Muscle Leg	muscle
4	chr1:179730200-179731400	Enhancers	Fetal Kidney	kidney
5	chr1:179730400-179730600	Bivalent Enhancer	H9 Derived Neuron Cultured Cells	ES cell derived
6	chr1:179730400-179730600	Bivalent Enhancer	IMR90 fetal lung fibroblasts Cell Line	lung
7	chr1:179730400-179731200	Enhancers	Fetal Adrenal Gland	Adrenal Gland

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links