Variant report

Variant	rs115919493
Chromosome Location	chr5:100235699-100235700
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr5:100226559..100228152-chr5:100235251..100237203,2	MCF-7	breast:
2	chr5:100234012..100237081-chr5:100237134..100240433,4	MCF-7	breast:
3	chr5:100235471..100237177-chr5:100239022..100241293,2	MCF-7	breast:
4	chr5:100160740..100162427-chr5:100234185..100236458,2	K562	blood:

Variant related genes	Relation type
ENSG00000113532	Chromatin interaction

Extended variants
information (count: 5 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1023765	chr5:99915011-100733755	Weak transcription Enhancers Bivalent/Poised TSS Strong transcription Active TSS ZNF genes & repeats Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	8 gene(s)	inside rSNPs	diseases
2	esv1834675	chr5:100143084-100535029	Flanking Active TSS Enhancers Weak transcription ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	4 gene(s)	inside rSNPs	diseases
3	nsv882471	chr5:100234439-100362071	Flanking Bivalent TSS/Enh Enhancers ZNF genes & repeats Bivalent Enhancer Active TSS Bivalent/Poised TSS Flanking Active TSS Weak transcription Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
4	nsv882472	chr5:100234439-100512338	Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Enhancers Weak transcription ZNF genes & repeats Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
5	esv3333403	chr5:100235653-100237701	Flanking Bivalent TSS/Enh Active TSS Flanking Active TSS Enhancers Bivalent Enhancer Weak transcription Bivalent/Poised TSS Transcr. at gene 5' and 3'	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:68 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:100208000-100235800	Weak transcription	Sigmoid Colon	Sigmoid Colon
2	chr5:100230800-100236400	Transcr. at gene 5' and 3'	Dnd41	blood
3	chr5:100232600-100245600	Active TSS	GM12878-XiMat	blood
4	chr5:100234000-100236200	Flanking Active TSS	Primary T helper cells PMA-I stimulated	--
5	chr5:100234400-100236400	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
6	chr5:100234600-100235800	Weak transcription	Right Atrium	heart
7	chr5:100234600-100235800	Weak transcription	Spleen	Spleen
8	chr5:100234600-100236000	Weak transcription	Small Intestine	intestine
9	chr5:100235000-100235800	Transcr. at gene 5' and 3'	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
10	chr5:100235000-100235800	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
11	chr5:100235000-100235800	Weak transcription	Pancreatic Islets	Pancreatic Islet
12	chr5:100235000-100236000	Flanking Active TSS	H9 Derived Neuron Cultured Cells	ES cell derived
13	chr5:100235000-100236400	Flanking Active TSS	Primary hematopoietic stem cells	blood
14	chr5:100235000-100236400	Flanking Active TSS	Monocytes-CD14+_RO01746	blood
15	chr5:100235200-100236000	Flanking Active TSS	Primary T cells from cord blood	blood
16	chr5:100235200-100236200	Flanking Active TSS	Primary B cells from cord blood	blood
17	chr5:100235400-100235800	Enhancers	Fetal Brain Male	brain
18	chr5:100235400-100236000	Transcr. at gene 5' and 3'	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
19	chr5:100235400-100236000	Flanking Active TSS	Primary T helper memory cells from peripheral blood 2	blood
20	chr5:100235400-100236200	Flanking Active TSS	Primary hematopoietic stem cells short term culture	blood
21	chr5:100235400-100236200	Flanking Active TSS	Primary T helper naive cells from peripheral blood	blood
22	chr5:100235400-100236200	Flanking Active TSS	Brain Germinal Matrix	brain
23	chr5:100235400-100236400	Flanking Active TSS	Primary T helper memory cells from peripheral blood 1	blood
24	chr5:100235400-100236400	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Female	--
25	chr5:100235400-100237000	Active TSS	Rectal Mucosa Donor 31	rectum
26	chr5:100235400-100237400	Active TSS	Rectal Mucosa Donor 29	rectum
27	chr5:100235400-100241400	Active TSS	Duodenum Mucosa	Duodenum
28	chr5:100235600-100235800	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
29	chr5:100235600-100235800	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
30	chr5:100235600-100235800	Transcr. at gene 5' and 3'	Primary B cells from peripheral blood	blood
31	chr5:100235600-100235800	Flanking Active TSS	Muscle Satellite Cultured Cells	--
32	chr5:100235600-100235800	Enhancers	Cortex derived primary cultured neurospheres	brain
33	chr5:100235600-100235800	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
34	chr5:100235600-100235800	Active TSS	Fetal Adrenal Gland	Adrenal Gland
35	chr5:100235600-100235800	Active TSS	Fetal Muscle Leg	muscle
36	chr5:100235600-100235800	Enhancers	Placenta	Placenta
37	chr5:100235600-100235800	Active TSS	HSMM	muscle
38	chr5:100235600-100235800	Enhancers	NH-A	brain
39	chr5:100235600-100235800	Enhancers	NHDF-Ad	bronchial
40	chr5:100235600-100236000	Flanking Active TSS	Primary T cells effector/memory enriched fromperipheralblood	blood
41	chr5:100235600-100236000	Flanking Active TSS	Primary T killer memory cells from peripheral blood	blood
42	chr5:100235600-100236000	Flanking Active TSS	Ganglion Eminence derived primary cultured neurospheres	brain
43	chr5:100235600-100236000	Bivalent/Poised TSS	Liver	Liver
44	chr5:100235600-100236000	Flanking Active TSS	Fetal Brain Female	brain
45	chr5:100235600-100236000	Flanking Active TSS	A549	lung
46	chr5:100235600-100236200	Flanking Active TSS	Primary monocytes fromperipheralblood	blood
47	chr5:100235600-100236200	Flanking Active TSS	Primary T cells fromperipheralblood	blood
48	chr5:100235600-100236200	Flanking Active TSS	Primary T helper naive cells fromperipheralblood	blood
49	chr5:100235600-100236200	Flanking Active TSS	Primary T regulatory cells fromperipheralblood	blood
50	chr5:100235600-100236200	Flanking Active TSS	Primary T killer naive cells fromperipheralblood	blood

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links