Variant report

Variant	rs11592280
Chromosome Location	chr10:91358374-91358375
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:91357088..91358823-chr10:91364317..91366919,2	K562	blood:
2	chr10:91356268..91359074-chr10:91403807..91407517,4	MCF-7	breast:

Variant related genes	Relation type
ENSG00000152782	Chromatin interaction
ENSG00000249962	Chromatin interaction
ENSG00000232936	Chromatin interaction

Extended variants
information (count: 2 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:1)

rs_ID	r²[population]
rs11185778	0.83[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1041964	chr10:90861380-91378356	Flanking Active TSS Enhancers Weak transcription Genic enhancers Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh Strong transcription Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	82 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:100 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:91335400-91370800	Weak transcription	A549	lung
2	chr10:91335400-91375600	Weak transcription	NH-A	brain
3	chr10:91343200-91372600	Weak transcription	Primary B cells from cord blood	blood
4	chr10:91343400-91369200	Weak transcription	Brain Angular Gyrus	brain
5	chr10:91344000-91369200	Weak transcription	Rectal Mucosa Donor 29	rectum
6	chr10:91345000-91392800	Weak transcription	Hela-S3	cervix
7	chr10:91347000-91359200	Weak transcription	Brain Cingulate Gyrus	brain
8	chr10:91348600-91373200	Weak transcription	Monocytes-CD14+_RO01746	blood
9	chr10:91349200-91367600	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
10	chr10:91349400-91372400	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
11	chr10:91350200-91359800	Strong transcription	iPS-20b Cell Line	embryonic stem cell
12	chr10:91350800-91363200	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
13	chr10:91351000-91360800	Weak transcription	Thymus	Thymus
14	chr10:91351000-91371200	Weak transcription	Brain Anterior Caudate	brain
15	chr10:91351400-91368600	Weak transcription	Gastric	stomach
16	chr10:91351600-91403400	Weak transcription	Esophagus	oesophagus
17	chr10:91351800-91358400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
18	chr10:91351800-91362600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
19	chr10:91351800-91368600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
20	chr10:91351800-91373200	Weak transcription	Pancreas	Pancrea
21	chr10:91352200-91358400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
22	chr10:91352200-91369400	Weak transcription	Aorta	Aorta
23	chr10:91352200-91373200	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
24	chr10:91352200-91373400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
25	chr10:91352600-91358400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
26	chr10:91352600-91361000	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
27	chr10:91352600-91369600	Weak transcription	Placenta	Placenta
28	chr10:91352600-91373200	Weak transcription	Adipose Nuclei	Adipose
29	chr10:91352600-91403400	Weak transcription	Small Intestine	intestine
30	chr10:91353200-91358400	Weak transcription	Right Ventricle	heart
31	chr10:91353200-91369200	Weak transcription	Brain Hippocampus Middle	brain
32	chr10:91353200-91369200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
33	chr10:91353200-91371600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
34	chr10:91353200-91377000	Weak transcription	Lung	lung
35	chr10:91353400-91369200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
36	chr10:91353400-91369200	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
37	chr10:91353600-91358400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
38	chr10:91353600-91358400	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
39	chr10:91353600-91360000	Weak transcription	Osteobl	bone
40	chr10:91353600-91366000	Weak transcription	HMEC	breast
41	chr10:91353600-91369200	Weak transcription	Brain Inferior Temporal Lobe	brain
42	chr10:91353600-91369800	Weak transcription	NHDF-Ad	bronchial
43	chr10:91353600-91374000	Weak transcription	HSMM	muscle
44	chr10:91353800-91358400	Weak transcription	Cortex derived primary cultured neurospheres	brain
45	chr10:91353800-91358400	Weak transcription	Fetal Intestine Small	intestine
46	chr10:91353800-91358400	Weak transcription	Fetal Stomach	stomach
47	chr10:91353800-91358600	Weak transcription	H9 Cell Line	embryonic stem cell
48	chr10:91353800-91359000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
49	chr10:91353800-91368600	Weak transcription	Fetal Lung	lung
50	chr10:91353800-91369200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived

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