Variant report

Variant	rs1159252
Chromosome Location	chr12:44594345-44594346
allele	A/C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr12:44588166..44590207-chr12:44592125..44594551,2	MCF-7	breast:

rs_ID	r²[population]
rs10047523	1.00[CEU][hapmap]
rs1032886	1.00[CEU][hapmap]
rs10506235	1.00[CEU][hapmap]
rs10506236	1.00[CEU][hapmap]
rs10506237	1.00[CEU][hapmap]
rs10506239	1.00[CEU][hapmap]
rs10506240	1.00[CEU][hapmap]
rs10506241	1.00[CEU][hapmap]
rs10880623	1.00[CEU][hapmap]
rs1115423	1.00[CEU][hapmap]
rs11182423	1.00[CEU][hapmap]
rs11182430	1.00[CEU][hapmap]
rs11182432	1.00[CEU][hapmap]
rs11182453	1.00[CEU][hapmap]
rs11182455	1.00[CEU][hapmap]
rs1155808	1.00[CEU][hapmap]
rs11609283	1.00[CEU][hapmap]
rs11609568	1.00[CEU][hapmap]
rs11610433	1.00[CEU][hapmap]
rs11612257	1.00[CEU][hapmap]
rs11612946	1.00[CEU][hapmap]
rs11613064	1.00[CEU][hapmap]
rs11613444	1.00[CEU][hapmap]
rs11613902	1.00[CEU][hapmap]
rs11615473	1.00[CEU][hapmap]
rs11830719	1.00[CEU][hapmap];0.95[ASN][1000 genomes]
rs11832219	1.00[CEU][hapmap]
rs11832828	1.00[CEU][hapmap];0.95[ASN][1000 genomes]
rs11833168	1.00[ASN][1000 genomes]
rs11834667	1.00[CEU][hapmap]
rs11835507	1.00[CEU][hapmap]
rs12297689	1.00[CEU][hapmap]
rs12297933	1.00[CEU][hapmap]
rs12299030	1.00[CEU][hapmap]
rs12299937	1.00[CEU][hapmap]
rs12300793	1.00[CEU][hapmap]
rs12307454	1.00[CEU][hapmap]
rs12307560	1.00[CEU][hapmap]
rs12308508	1.00[CEU][hapmap]
rs12308569	1.00[CEU][hapmap]
rs12309639	1.00[CEU][hapmap]
rs12315961	1.00[CEU][hapmap]
rs1352935	1.00[CEU][hapmap]
rs1527316	1.00[CEU][hapmap]
rs1643429	1.00[CEU][hapmap]
rs17094062	1.00[CEU][hapmap]
rs17094063	1.00[CEU][hapmap]
rs17094092	1.00[CEU][hapmap]
rs17094117	1.00[CEU][hapmap]
rs17094121	1.00[CEU][hapmap]
rs17094169	1.00[CEU][hapmap]
rs17094183	1.00[CEU][hapmap]
rs17094226	1.00[CEU][hapmap]
rs17094228	1.00[CEU][hapmap]
rs17094231	1.00[CEU][hapmap]
rs17094235	1.00[CEU][hapmap]
rs17094242	1.00[CEU][hapmap]
rs17094260	1.00[CEU][hapmap]
rs17094263	1.00[CEU][hapmap]
rs17094282	1.00[CEU][hapmap]
rs17094291	1.00[CEU][hapmap]
rs17094292	1.00[CEU][hapmap]
rs17094298	1.00[CEU][hapmap]
rs17094299	1.00[CEU][hapmap]
rs17094300	1.00[CEU][hapmap]
rs17094304	1.00[CEU][hapmap]
rs17094313	1.00[CEU][hapmap]
rs17094322	1.00[CEU][hapmap]
rs17094323	1.00[CEU][hapmap]
rs17094325	1.00[CEU][hapmap]
rs17094328	1.00[CEU][hapmap]
rs17094330	1.00[CEU][hapmap]
rs17094336	1.00[CEU][hapmap]
rs17121305	1.00[CEU][hapmap]
rs17121310	1.00[CEU][hapmap]
rs2032782	1.00[CEU][hapmap]
rs2062952	1.00[CEU][hapmap]
rs2112147	1.00[CEU][hapmap]
rs2638853	1.00[CEU][hapmap]
rs4631946	0.88[CEU][hapmap]
rs55782485	0.95[ASN][1000 genomes]
rs55977905	0.95[ASN][1000 genomes]
rs60400993	1.00[ASN][1000 genomes]
rs6582498	1.00[CEU][hapmap]
rs7137469	1.00[CEU][hapmap]
rs7137787	1.00[CEU][hapmap];0.86[ASN][1000 genomes]
rs7139362	1.00[CEU][hapmap]
rs7305976	1.00[CEU][hapmap]
rs7306362	0.95[ASN][1000 genomes]
rs7306647	1.00[CEU][hapmap]
rs7308476	1.00[CEU][hapmap]
rs7311714	1.00[CEU][hapmap]
rs7312930	1.00[CEU][hapmap]
rs7315208	1.00[CEU][hapmap]
rs7316737	1.00[CEU][hapmap]
rs73272204	0.82[AFR][1000 genomes]
rs73272217	0.83[AFR][1000 genomes];0.90[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs73288040	1.00[ASN][1000 genomes]
rs7954216	1.00[CEU][hapmap]
rs7961974	1.00[CEU][hapmap]
rs7961986	0.83[AFR][1000 genomes]
rs7967957	1.00[CEU][hapmap]
rs7968777	1.00[CEU][hapmap];0.95[ASN][1000 genomes]
rs7969885	1.00[CEU][hapmap]
rs7971340	1.00[CEU][hapmap]
rs7976652	1.00[CEU][hapmap]
rs7977482	1.00[CEU][hapmap]
rs7980383	1.00[CEU][hapmap]
rs860867	0.87[CEU][hapmap]
rs9738149	1.00[CEU][hapmap];0.95[ASN][1000 genomes]

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1049818	chr12:44486312-45133783	Enhancers ZNF genes & repeats Weak transcription Active TSS Strong transcription Flanking Active TSS Genic enhancers Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
2	nsv832393	chr12:44529406-44692414	Enhancers Weak transcription Active TSS Strong transcription ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Genic enhancers	TF binding region Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:44511400-44605800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr12:44574000-44595600	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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