Variant report

Variant	rs11595506
Chromosome Location	chr10:98352281-98352282
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr10:98345341..98350021-chr10:98351580..98356203,7	MCF-7	breast:
2	chr10:98323660..98326200-chr10:98351272..98352990,2	MCF-7	breast:
3	chr10:98345273..98348471-chr10:98351958..98358343,11	MCF-7	breast:
4	chr10:98345562..98347503-chr10:98350531..98353019,3	K562	blood:

Variant related genes	Relation type
ENSG00000077147	Chromatin interaction

Extended variants
information (count: 4 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:3)

rs_ID	r²[population]
rs1044029	1.00[AFR][1000 genomes]
rs11592104	1.00[AFR][1000 genomes]
rs61858924	1.00[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3413353	chr10:98039370-98561524	Enhancers Genic enhancers Weak transcription Strong transcription Active TSS Bivalent/Poised TSS ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	45 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:34 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:98347000-98354600	Weak transcription	Spleen	Spleen
2	chr10:98347400-98358800	Weak transcription	Pancreas	Pancrea
3	chr10:98347800-98365800	Weak transcription	Ovary	ovary
4	chr10:98348000-98354600	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
5	chr10:98348000-98373600	Weak transcription	Left Ventricle	heart
6	chr10:98348200-98352400	Weak transcription	Primary B cells from peripheral blood	blood
7	chr10:98348200-98352600	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
8	chr10:98348200-98352800	Weak transcription	Primary B cells from cord blood	blood
9	chr10:98348200-98354200	Weak transcription	Placenta	Placenta
10	chr10:98348200-98356200	Weak transcription	Adipose Nuclei	Adipose
11	chr10:98348200-98357800	Weak transcription	Primary T cells fromperipheralblood	blood
12	chr10:98348200-98359000	Weak transcription	Brain Substantia Nigra	brain
13	chr10:98348800-98355200	Weak transcription	HSMMtube	muscle
14	chr10:98349400-98352400	Weak transcription	Liver	Liver
15	chr10:98349400-98352600	Weak transcription	Monocytes-CD14+_RO01746	blood
16	chr10:98349600-98354800	Weak transcription	Rectal Mucosa Donor 31	rectum
17	chr10:98349600-98355600	Weak transcription	Duodenum Mucosa	Duodenum
18	chr10:98349800-98352400	Weak transcription	GM12878-XiMat	blood
19	chr10:98349800-98354200	Weak transcription	Fetal Intestine Large	intestine
20	chr10:98349800-98354400	Weak transcription	Fetal Intestine Small	intestine
21	chr10:98349800-98354400	Weak transcription	Sigmoid Colon	Sigmoid Colon
22	chr10:98349800-98355200	Weak transcription	K562	blood
23	chr10:98349800-98366400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
24	chr10:98349800-98367800	Weak transcription	Small Intestine	intestine
25	chr10:98350000-98355200	Weak transcription	Stomach Mucosa	stomach
26	chr10:98350200-98352800	Enhancers	Primary hematopoietic stem cells short term culture	blood
27	chr10:98350800-98395600	Strong transcription	Primary neutrophils fromperipheralblood	blood
28	chr10:98351000-98352800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
29	chr10:98351000-98352800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
30	chr10:98351400-98352400	Enhancers	Primary hematopoietic stem cells	blood
31	chr10:98351400-98352400	Enhancers	Fetal Thymus	thymus
32	chr10:98351400-98352400	Enhancers	Dnd41	blood
33	chr10:98351600-98363400	Weak transcription	Brain Hippocampus Middle	brain
34	chr10:98352200-98352800	Enhancers	Primary monocytes fromperipheralblood	blood

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