Variant report

Variant	rs11595787
Chromosome Location	chr10:26720349-26720350
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 3 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:1)

rs_ID	r²[population]
rs4747556	0.80[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv894975	chr10:26343356-27014467	Strong transcription Flanking Active TSS Enhancers Weak transcription Flanking Bivalent TSS/Enh Genic enhancers Active TSS Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	25 gene(s)	inside rSNPs	diseases
2	nsv1043832	chr10:26669040-26809400	Enhancers Weak transcription Strong transcription Active TSS Genic enhancers Transcr. at gene 5' and 3' Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs11595787	APBB1IP	Cis_1M	lymphoblastoid	RTeQTL

Chromatin state (count:27 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:26718400-26726400	Enhancers	Primary monocytes fromperipheralblood	blood
2	chr10:26718800-26724000	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
3	chr10:26719000-26721400	Enhancers	Primary T helper cells PMA-I stimulated	--
4	chr10:26719200-26720400	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
5	chr10:26719200-26720600	Enhancers	Primary T cells fromperipheralblood	blood
6	chr10:26719200-26721000	Enhancers	Primary hematopoietic stem cells	blood
7	chr10:26719200-26722200	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
8	chr10:26719400-26720600	Enhancers	Placenta	Placenta
9	chr10:26719600-26721200	Enhancers	Primary hematopoietic stem cells short term culture	blood
10	chr10:26719600-26721200	Enhancers	Primary T killer memory cells from peripheral blood	blood
11	chr10:26719800-26725000	Weak transcription	Duodenum Mucosa	Duodenum
12	chr10:26720000-26720400	Enhancers	Primary neutrophils fromperipheralblood	blood
13	chr10:26720000-26720400	Weak transcription	Fetal Thymus	thymus
14	chr10:26720000-26720400	Enhancers	GM12878-XiMat	blood
15	chr10:26720000-26720400	Enhancers	Monocytes-CD14+_RO01746	blood
16	chr10:26720000-26720600	Enhancers	Primary B cells from peripheral blood	blood
17	chr10:26720000-26720600	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
18	chr10:26720000-26721000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
19	chr10:26720000-26721200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
20	chr10:26720000-26721600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
21	chr10:26720000-26722000	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
22	chr10:26720000-26722800	Enhancers	Primary B cells from cord blood	blood
23	chr10:26720000-26724800	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
24	chr10:26720000-26725200	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
25	chr10:26720200-26720600	Weak transcription	Primary T helper naive cells from peripheral blood	blood
26	chr10:26720200-26720600	Weak transcription	Primary T helper cells fromperipheralblood	blood
27	chr10:26720200-26720600	Enhancers	Lung	lung

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