Variant report

Variant	rs115959772
Chromosome Location	chr1:77333401-77333402
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 5 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1003826	chr1:76965331-77656929	Flanking Active TSS Enhancers Weak transcription ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription Genic enhancers Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	13 gene(s)	inside rSNPs	diseases
2	nsv535006	chr1:76965331-77656929	Enhancers Flanking Bivalent TSS/Enh Weak transcription Strong transcription ZNF genes & repeats Flanking Active TSS Bivalent/Poised TSS Genic enhancers Active TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	13 gene(s)	inside rSNPs	diseases
3	nsv1005649	chr1:77141039-77398747	Enhancers Active TSS Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Strong transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases
4	nsv1003386	chr1:77305197-77375536	Flanking Bivalent TSS/Enh Enhancers Active TSS Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Weak transcription Strong transcription ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	2 gene(s)	inside rSNPs	diseases
5	nsv820187	chr1:77331722-77334433	Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS Bivalent Enhancer Weak transcription Flanking Active TSS Enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region miRNA target site	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:119 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:77332200-77335800	Active TSS	Brain Anterior Caudate	brain
2	chr1:77332600-77334400	Active TSS	Cortex derived primary cultured neurospheres	brain
3	chr1:77332800-77334000	Active TSS	ES-UCSF4 Cell Line	embryonic stem cell
4	chr1:77332800-77334200	Active TSS	Right Atrium	heart
5	chr1:77332800-77334400	Active TSS	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
6	chr1:77332800-77334400	Active TSS	H9 Derived Neuron Cultured Cells	ES cell derived
7	chr1:77332800-77334400	Active TSS	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
8	chr1:77332800-77334400	Bivalent/Poised TSS	Primary T regulatory cells fromperipheralblood	blood
9	chr1:77332800-77334600	Flanking Bivalent TSS/Enh	Primary T helper cells fromperipheralblood	blood
10	chr1:77332800-77334600	Active TSS	NHDF-Ad	bronchial
11	chr1:77332800-77334600	Bivalent/Poised TSS	NHLF	lung
12	chr1:77332800-77334800	Flanking Bivalent TSS/Enh	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
13	chr1:77332800-77334800	Bivalent/Poised TSS	Colon Smooth Muscle	Colon
14	chr1:77332800-77334800	Active TSS	Ovary	ovary
15	chr1:77332800-77335000	Active TSS	H9 Cell Line	embryonic stem cell
16	chr1:77332800-77335000	Active TSS	Aorta	Aorta
17	chr1:77332800-77335200	Bivalent/Poised TSS	H1 Cell Line	embryonic stem cell
18	chr1:77332800-77335200	Bivalent/Poised TSS	HUES6 Cell Line	embryonic stem cell
19	chr1:77332800-77335200	Active TSS	Breast Myoepithelial Primary Cells	Breast
20	chr1:77332800-77335600	Bivalent/Poised TSS	iPS-18 Cell Line	embryonic stem cell
21	chr1:77332800-77335600	Bivalent/Poised TSS	Duodenum Smooth Muscle	Duodenum
22	chr1:77332800-77336000	Active TSS	Brain Angular Gyrus	brain
23	chr1:77332800-77336000	Active TSS	Brain Dorsolateral Prefrontal Cortex	brain
24	chr1:77332800-77336200	Active TSS	Brain Cingulate Gyrus	brain
25	chr1:77332800-77336200	Active TSS	Pancreatic Islets	Pancreatic Islet
26	chr1:77332800-77337400	Active TSS	Brain Inferior Temporal Lobe	brain
27	chr1:77333000-77333600	Active TSS	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
28	chr1:77333000-77333600	Active TSS	iPS DF 19.11 Cell Line	embryonic stem cell
29	chr1:77333000-77333600	Bivalent Enhancer	Primary T killer memory cells from peripheral blood	blood
30	chr1:77333000-77333800	Flanking Bivalent TSS/Enh	Primary T cells from cord blood	blood
31	chr1:77333000-77333800	Flanking Bivalent TSS/Enh	Left Ventricle	heart
32	chr1:77333000-77334000	Flanking Active TSS	Right Ventricle	heart
33	chr1:77333000-77334000	Bivalent/Poised TSS	A549	lung
34	chr1:77333000-77334000	Flanking Bivalent TSS/Enh	NHEK	skin
35	chr1:77333000-77334200	Active TSS	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
36	chr1:77333000-77334200	Bivalent Enhancer	Placenta	Placenta
37	chr1:77333000-77334200	Flanking Bivalent TSS/Enh	Skeletal Muscle Male	skeletal muscle
38	chr1:77333000-77334400	Flanking Bivalent TSS/Enh	IMR90 fetal lung fibroblasts Cell Line	lung
39	chr1:77333000-77334400	Active TSS	iPS-15b Cell Line	embryonic stem cell
40	chr1:77333000-77334400	Bivalent/Poised TSS	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
41	chr1:77333000-77334400	Flanking Bivalent TSS/Enh	Adipose Nuclei	Adipose
42	chr1:77333000-77334400	Bivalent Enhancer	Liver	Liver
43	chr1:77333000-77334400	Active TSS	Brain Substantia Nigra	brain
44	chr1:77333000-77334400	Active TSS	Fetal Brain Female	brain
45	chr1:77333000-77334400	Bivalent/Poised TSS	Fetal Lung	lung
46	chr1:77333000-77334400	Active TSS	HSMMtube	muscle
47	chr1:77333000-77334400	Bivalent/Poised TSS	Osteobl	bone
48	chr1:77333000-77334600	Bivalent Enhancer	Primary B cells from peripheral blood	blood
49	chr1:77333000-77334600	Bivalent/Poised TSS	Primary T helper naive cells from peripheral blood	blood
50	chr1:77333000-77334600	Bivalent Enhancer	Primary T helper memory cells from peripheral blood 1	blood

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