Variant report

Variant	rs11599280
Chromosome Location	chr10:22792993-22792994
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 9 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs12221321	0.85[ASN][1000 genomes]
rs12767557	0.99[ASN][1000 genomes]
rs12770182	0.99[ASN][1000 genomes]
rs35354362	0.87[AFR][1000 genomes];0.86[AMR][1000 genomes];0.95[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs35428234	0.97[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs4304661	0.82[AMR][1000 genomes]
rs4590763	1.00[CHB][hapmap];0.95[CHD][hapmap];0.94[JPT][hapmap];0.99[ASN][1000 genomes]
rs61847436	0.82[ASN][1000 genomes]
rs7092910	0.85[ASN][1000 genomes]

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:22765800-22806600	Weak transcription	Right Atrium	heart
2	chr10:22790600-22793000	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
3	chr10:22790600-22794600	Weak transcription	Primary T cells fromperipheralblood	blood
4	chr10:22790600-22794800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
5	chr10:22790800-22794800	Weak transcription	Primary T cells from cord blood	blood
6	chr10:22791600-22795200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
7	chr10:22792400-22793000	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
8	chr10:22792400-22793200	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
9	chr10:22792400-22794400	Enhancers	K562	blood
10	chr10:22792600-22793000	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
11	chr10:22792800-22794600	Weak transcription	Duodenum Mucosa	Duodenum

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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