Variant report

Variant	rs11599490
Chromosome Location	chr10:92768491-92768492
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 11 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs11593249	0.85[AFR][1000 genomes];0.97[EUR][1000 genomes]
rs11596239	0.93[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs11596928	1.00[EUR][1000 genomes]
rs17103739	0.93[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs17103919	0.97[EUR][1000 genomes]
rs3864853	0.86[AFR][1000 genomes];0.97[EUR][1000 genomes]
rs4933639	0.97[EUR][1000 genomes]
rs58760601	1.00[EUR][1000 genomes]
rs6583745	0.97[EUR][1000 genomes]
rs7079206	0.97[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv831945	chr10:92590576-92793582	Active TSS Enhancers Flanking Active TSS Weak transcription Genic enhancers Flanking Bivalent TSS/Enh Strong transcription Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	15 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:18 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:92761800-92782800	Weak transcription	Aorta	Aorta
2	chr10:92765200-92770000	Enhancers	Fetal Thymus	thymus
3	chr10:92766600-92768600	Weak transcription	Fetal Muscle Leg	muscle
4	chr10:92766800-92769600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
5	chr10:92767000-92768600	Weak transcription	Breast Myoepithelial Primary Cells	Breast
6	chr10:92767200-92768600	Weak transcription	Fetal Heart	heart
7	chr10:92767200-92768600	Weak transcription	HSMMtube	muscle
8	chr10:92767200-92770600	Weak transcription	Osteobl	bone
9	chr10:92767400-92781400	Weak transcription	HSMM	muscle
10	chr10:92767800-92769000	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
11	chr10:92768000-92769000	Weak transcription	Brain Inferior Temporal Lobe	brain
12	chr10:92768000-92769000	Weak transcription	Thymus	Thymus
13	chr10:92768000-92770000	Enhancers	Dnd41	blood
14	chr10:92768200-92768600	Weak transcription	Primary T cells from cord blood	blood
15	chr10:92768200-92769200	Enhancers	GM12878-XiMat	blood
16	chr10:92768200-92769600	Weak transcription	Brain Substantia Nigra	brain
17	chr10:92768400-92768800	Weak transcription	Primary B cells from peripheral blood	blood
18	chr10:92768400-92768800	Weak transcription	Brain Anterior Caudate	brain

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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