Variant report

Variant	rs115997791
Chromosome Location	chr3:59760392-59760393
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 4 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1014601	chr3:59666609-59888166	Weak transcription Enhancers Active TSS Flanking Active TSS Strong transcription ZNF genes & repeats Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh	Chromatin interactive region lncRNA miRNA target site	1 gene(s)	inside rSNPs	diseases
2	nsv1003387	chr3:59756364-59831340	Enhancers Strong transcription Weak transcription Bivalent Enhancer Active TSS Flanking Active TSS ZNF genes & repeats Genic enhancers	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
3	nsv460562	chr3:59760118-59826778	Weak transcription Enhancers Strong transcription Flanking Active TSS Active TSS Bivalent Enhancer Genic enhancers ZNF genes & repeats	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
4	nsv590381	chr3:59760118-59826778	Enhancers Weak transcription Flanking Active TSS Strong transcription Active TSS Bivalent Enhancer Genic enhancers ZNF genes & repeats	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:47 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:59755600-59761400	Enhancers	Fetal Thymus	thymus
2	chr3:59756200-59760400	Enhancers	Primary hematopoietic stem cells	blood
3	chr3:59756400-59761200	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
4	chr3:59756600-59761200	Enhancers	Muscle Satellite Cultured Cells	--
5	chr3:59756800-59763600	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
6	chr3:59757200-59761200	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
7	chr3:59757800-59762200	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
8	chr3:59758000-59760400	Weak transcription	NHEK	skin
9	chr3:59758000-59761200	Enhancers	Breast Myoepithelial Primary Cells	Breast
10	chr3:59758800-59760800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
11	chr3:59759000-59761000	Enhancers	Fetal Brain Male	brain
12	chr3:59759000-59761600	Enhancers	HSMM	muscle
13	chr3:59759000-59762800	Enhancers	Primary T helper cells PMA-I stimulated	--
14	chr3:59759200-59761200	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
15	chr3:59759200-59761200	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
16	chr3:59759200-59761800	Enhancers	Primary T helper cells fromperipheralblood	blood
17	chr3:59759400-59760600	Enhancers	Primary T killer memory cells from peripheral blood	blood
18	chr3:59759400-59760800	Enhancers	Primary T cells from cord blood	blood
19	chr3:59759400-59760800	Enhancers	Fetal Muscle Leg	muscle
20	chr3:59759400-59761000	Enhancers	Primary T helper naive cells fromperipheralblood	blood
21	chr3:59759400-59761600	Enhancers	HSMMtube	muscle
22	chr3:59759400-59761800	Enhancers	Brain Germinal Matrix	brain
23	chr3:59759400-59762800	Weak transcription	Primary B cells from cord blood	blood
24	chr3:59759400-59765200	Enhancers	Primary hematopoietic stem cells short term culture	blood
25	chr3:59759600-59760600	Enhancers	NH-A	brain
26	chr3:59759600-59762200	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
27	chr3:59759600-59762800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
28	chr3:59759600-59763000	Weak transcription	Primary B cells from peripheral blood	blood
29	chr3:59759600-59763000	Enhancers	Dnd41	blood
30	chr3:59759600-59763200	Weak transcription	GM12878-XiMat	blood
31	chr3:59759800-59760600	Enhancers	NHDF-Ad	bronchial
32	chr3:59759800-59760800	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
33	chr3:59759800-59761000	Bivalent Enhancer	Thymus	Thymus
34	chr3:59759800-59761200	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
35	chr3:59759800-59761200	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
36	chr3:59759800-59761200	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
37	chr3:59759800-59761200	Enhancers	HMEC	breast
38	chr3:59759800-59761400	Enhancers	Osteobl	bone
39	chr3:59759800-59761800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
40	chr3:59759800-59762400	Enhancers	Cortex derived primary cultured neurospheres	brain
41	chr3:59760000-59760400	Enhancers	A549	lung
42	chr3:59760000-59761000	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
43	chr3:59760000-59761000	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
44	chr3:59760000-59761000	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
45	chr3:59760000-59761000	Enhancers	Fetal Stomach	stomach
46	chr3:59760200-59760400	Enhancers	Primary T killer naive cells fromperipheralblood	blood
47	chr3:59760200-59762000	Weak transcription	Primary T helper naive cells from peripheral blood	blood

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