Variant report

Variant	rs11600455
Chromosome Location	chr11:93912440-93912441
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 22 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs1046173	1.00[ASN][1000 genomes]
rs1071	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11600490	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11601530	1.00[ASN][1000 genomes]
rs12786223	0.88[ASN][1000 genomes]
rs13655	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17586515	0.93[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs17664588	0.93[ASN][1000 genomes]
rs1792633	1.00[ASN][1000 genomes]
rs3017869	0.89[ASN][1000 genomes]
rs35053221	0.95[ASN][1000 genomes]
rs35063845	0.95[ASN][1000 genomes]
rs4753547	1.00[ASN][1000 genomes]
rs67946813	1.00[ASN][1000 genomes]
rs72972594	0.90[AMR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv898184	chr11:93741612-93969726	Enhancers Strong transcription Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	16 gene(s)	inside rSNPs	diseases
2	nsv1046092	chr11:93833446-93964452	Strong transcription Enhancers Weak transcription Flanking Active TSS Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	12 gene(s)	inside rSNPs	diseases
3	nsv898185	chr11:93851048-93927529	Enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	12 gene(s)	inside rSNPs	diseases
4	nsv469980	chr11:93864321-93962121	Weak transcription Flanking Active TSS Strong transcription Enhancers Genic enhancers ZNF genes & repeats Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases
5	nsv468795	chr11:93864321-93964917	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Strong transcription Genic enhancers Active TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases
6	nsv555966	chr11:93864321-93964917	Enhancers Weak transcription Strong transcription Flanking Active TSS ZNF genes & repeats Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases
7	nsv517664	chr11:93866147-93913036	Flanking Active TSS Weak transcription Enhancers ZNF genes & repeats Strong transcription Genic enhancers Active TSS	Chromatin interactive region	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:124 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:93884000-93912800	Weak transcription	Rectal Mucosa Donor 31	rectum
2	chr11:93885200-93916200	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
3	chr11:93886000-93913000	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
4	chr11:93886600-93913000	Weak transcription	K562	blood
5	chr11:93886800-93912800	Weak transcription	Rectal Smooth Muscle	rectum
6	chr11:93889800-93912800	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
7	chr11:93897800-93920000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
8	chr11:93900400-93916000	Weak transcription	Pancreatic Islets	Pancreatic Islet
9	chr11:93901200-93913200	Weak transcription	Brain Substantia Nigra	brain
10	chr11:93901200-93917200	Weak transcription	Brain Cingulate Gyrus	brain
11	chr11:93901400-93921200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
12	chr11:93901800-93914000	Weak transcription	Esophagus	oesophagus
13	chr11:93904400-93913800	Weak transcription	Skeletal Muscle Male	skeletal muscle
14	chr11:93904800-93920000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
15	chr11:93905400-93919600	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
16	chr11:93905600-93914000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
17	chr11:93905600-93914800	Weak transcription	Small Intestine	intestine
18	chr11:93907200-93919600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
19	chr11:93907400-93912800	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
20	chr11:93908000-93912800	Weak transcription	Sigmoid Colon	Sigmoid Colon
21	chr11:93908000-93913000	Weak transcription	Fetal Brain Male	brain
22	chr11:93908600-93913000	Weak transcription	Colon Smooth Muscle	Colon
23	chr11:93908600-93913600	Weak transcription	Brain Germinal Matrix	brain
24	chr11:93908800-93913200	Weak transcription	Brain Angular Gyrus	brain
25	chr11:93909000-93913600	Weak transcription	Brain Hippocampus Middle	brain
26	chr11:93909000-93914400	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
27	chr11:93909200-93912800	Weak transcription	Brain Inferior Temporal Lobe	brain
28	chr11:93909200-93912800	Weak transcription	Psoas Muscle	Psoas
29	chr11:93909200-93913000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
30	chr11:93909200-93913400	Weak transcription	NH-A	brain
31	chr11:93909200-93917400	Weak transcription	Muscle Satellite Cultured Cells	--
32	chr11:93909400-93917400	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
33	chr11:93909400-93918400	Weak transcription	Fetal Heart	heart
34	chr11:93909600-93912800	Weak transcription	Hela-S3	cervix
35	chr11:93909600-93917000	Strong transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
36	chr11:93909800-93913000	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
37	chr11:93909800-93917200	Weak transcription	HUVEC	blood vessel
38	chr11:93910000-93914000	Strong transcription	Fetal Stomach	stomach
39	chr11:93910000-93914400	Strong transcription	Primary B cells from cord blood	blood
40	chr11:93910000-93916800	Strong transcription	iPS-20b Cell Line	embryonic stem cell
41	chr11:93910200-93912800	Weak transcription	Placenta	Placenta
42	chr11:93910200-93913600	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
43	chr11:93910400-93919000	Weak transcription	Primary T killer memory cells from peripheral blood	blood
44	chr11:93910600-93913600	Strong transcription	Gastric	stomach
45	chr11:93910600-93914200	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
46	chr11:93910600-93915000	Strong transcription	Breast Myoepithelial Primary Cells	Breast
47	chr11:93910600-93915000	Strong transcription	Aorta	Aorta
48	chr11:93910600-93915600	Strong transcription	Skeletal Muscle Female	skeletal muscle
49	chr11:93910600-93916200	Strong transcription	HUES64 Cell Line	embryonic stem cell
50	chr11:93910600-93917200	Strong transcription	Dnd41	blood

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