Variant report

Variant	rs116006170
Chromosome Location	chr6:149403887-149403888
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:14)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:14 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr6:149403185..149406619-chr6:149636459..149640490,6	MCF-7	breast:
2	chr6:149376456..149387248-chr6:149393069..149406749,44	MCF-7	breast:
3	chr6:149351101..149353287-chr6:149403711..149405332,2	MCF-7	breast:
4	chr6:149398184..149404330-chr6:149748783..149757211,17	MCF-7	breast:
5	chr6:149400690..149404463-chr6:149557705..149560765,3	MCF-7	breast:
6	chr6:149403546..149405642-chr6:149411704..149413513,2	MCF-7	breast:
7	chr6:149402943..149406251-chr6:149407231..149409997,4	K562	blood:
8	chr6:149400900..149408936-chr6:149636750..149640736,16	MCF-7	breast:
9	chr6:149403286..149404899-chr6:149752639..149753736,6	MCF-7	breast:
10	chr6:149400971..149403372-chr6:149403878..149405547,2	K562	blood:
11	chr6:149403345..149406276-chr6:149836052..149838549,2	MCF-7	breast:
12	chr6:149403173..149404038-chr6:149750454..149751288,2	MCF-7	breast:
13	chr6:149403053..149404232-chr6:149752839..149753842,8	K562	blood:
14	chr6:149350099..149351108-chr6:149403086..149404039,4	MCF-7	breast:

No data

Variant related genes	Relation type
ENSG00000055208	Chromatin interaction
ENSG00000252244	Chromatin interaction

Extended variants
information (count: 5 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1032319	chr6:149271433-149550525	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Strong transcription Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	15 gene(s)	inside rSNPs	diseases
2	nsv538470	chr6:149271433-149550525	Enhancers Weak transcription Active TSS Strong transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	15 gene(s)	inside rSNPs	diseases
3	nsv830842	chr6:149272321-149427340	Enhancers Bivalent Enhancer ZNF genes & repeats Weak transcription Flanking Active TSS Strong transcription Genic enhancers Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	11 gene(s)	inside rSNPs	diseases
4	nsv1024776	chr6:149398652-149654593	Weak transcription Active TSS Bivalent Enhancer Enhancers Flanking Active TSS Transcr. at gene 5' and 3' Strong transcription ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases
5	nsv528588	chr6:149403469-149409860	Weak transcription Enhancers	Chromatin interactive region	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:47 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:149385200-149404000	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
2	chr6:149387400-149404200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
3	chr6:149395000-149415000	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
4	chr6:149397800-149407600	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
5	chr6:149399200-149415000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
6	chr6:149400200-149406000	Enhancers	Dnd41	blood
7	chr6:149400600-149406800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
8	chr6:149401400-149404000	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
9	chr6:149402000-149404200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
10	chr6:149402200-149405200	Weak transcription	Fetal Thymus	thymus
11	chr6:149402200-149405200	Weak transcription	Pancreas	Pancrea
12	chr6:149402200-149407000	Weak transcription	Cortex derived primary cultured neurospheres	brain
13	chr6:149402200-149409000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
14	chr6:149402200-149410600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
15	chr6:149402200-149414400	Weak transcription	Fetal Kidney	kidney
16	chr6:149402200-149414600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
17	chr6:149402200-149415000	Weak transcription	Esophagus	oesophagus
18	chr6:149402400-149407800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
19	chr6:149402400-149409000	Weak transcription	Placenta Amnion	Placenta Amnion
20	chr6:149402400-149416200	Weak transcription	Fetal Heart	heart
21	chr6:149402600-149404000	Weak transcription	Duodenum Smooth Muscle	Duodenum
22	chr6:149402600-149404200	Weak transcription	Primary monocytes fromperipheralblood	blood
23	chr6:149402600-149406000	Weak transcription	Aorta	Aorta
24	chr6:149402800-149407000	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
25	chr6:149403000-149404200	Weak transcription	Rectal Smooth Muscle	rectum
26	chr6:149403000-149407200	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
27	chr6:149403200-149405600	Enhancers	Primary T killer naive cells fromperipheralblood	blood
28	chr6:149403200-149406600	Enhancers	Primary T regulatory cells fromperipheralblood	blood
29	chr6:149403200-149407200	Enhancers	Primary T helper cells PMA-I stimulated	--
30	chr6:149403200-149407600	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
31	chr6:149403400-149404200	Enhancers	Colon Smooth Muscle	Colon
32	chr6:149403400-149404600	Enhancers	Primary T cells fromperipheralblood	blood
33	chr6:149403400-149405600	Enhancers	Breast Myoepithelial Primary Cells	Breast
34	chr6:149403400-149406200	Enhancers	Primary T helper naive cells fromperipheralblood	blood
35	chr6:149403400-149406200	Enhancers	Primary T helper cells fromperipheralblood	blood
36	chr6:149403600-149404400	Enhancers	Brain Anterior Caudate	brain
37	chr6:149403600-149404400	Enhancers	Brain Cingulate Gyrus	brain
38	chr6:149403600-149404400	Enhancers	Brain Substantia Nigra	brain
39	chr6:149403600-149404800	Enhancers	Fetal Lung	lung
40	chr6:149403600-149405600	Enhancers	Primary hematopoietic stem cells	blood
41	chr6:149403600-149405800	Enhancers	Primary T killer memory cells from peripheral blood	blood
42	chr6:149403600-149406200	Enhancers	Primary T cells from cord blood	blood
43	chr6:149403600-149406200	Enhancers	Primary T helper naive cells from peripheral blood	blood
44	chr6:149403600-149407200	Enhancers	Primary T cells effector/memory enriched fromperipheralblood	blood
45	chr6:149403800-149404000	Enhancers	HUES64 Cell Line	embryonic stem cell
46	chr6:149403800-149404000	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
47	chr6:149403800-149404600	Enhancers	Brain Hippocampus Middle	brain

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