Variant report

Variant	rs11601647
Chromosome Location	chr11:9625840-9625841
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	RUNX3	chr11:9625677-9626065	GM12878	blood:	n/a	n/a
2	JUND	chr11:9625769-9626010	K562	blood:	n/a	chr11:9625873-9625881 chr11:9625873-9625881 chr11:9625873-9625880 chr11:9625872-9625882 chr11:9625872-9625883
3	MAFK	chr11:9625685-9625880	K562	blood:	n/a	n/a
4	RUNX3	chr11:9625647-9626050	GM12878	blood:	n/a	n/a
5	ZNF384	chr11:9625670-9626075	K562	blood:	n/a	n/a

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr11:9625163..9627064-chr11:9628384..9630291,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000243964	TF binding region

Extended variants
information (count: 7 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:4)

rs_ID	r²[population]
rs11042437	0.85[EUR][1000 genomes]
rs11042446	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs7928738	0.80[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs7937029	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv427882	chr11:9431600-9626580	Genic enhancers Weak transcription Strong transcription Transcr. at gene 5' and 3' Active TSS Enhancers Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	77 gene(s)	inside rSNPs	diseases
2	nsv553467	chr11:9518551-9648721	Weak transcription Enhancers Strong transcription Genic enhancers Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	37 gene(s)	inside rSNPs	diseases
3	nsv971986	chr11:9625730-9628863	Weak transcription Enhancers Flanking Active TSS	TF binding region Chromatin interactive region	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:39 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:9597200-9635000	Weak transcription	Pancreas	Pancrea
2	chr11:9610600-9627200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
3	chr11:9610600-9635000	Weak transcription	Aorta	Aorta
4	chr11:9623200-9628200	Weak transcription	Fetal Intestine Large	intestine
5	chr11:9623400-9627600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
6	chr11:9623400-9628400	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
7	chr11:9623400-9628600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
8	chr11:9623400-9631600	Weak transcription	Breast Myoepithelial Primary Cells	Breast
9	chr11:9623400-9634600	Weak transcription	Thymus	Thymus
10	chr11:9623600-9628200	Weak transcription	Fetal Intestine Small	intestine
11	chr11:9623600-9628400	Weak transcription	HUES64 Cell Line	embryonic stem cell
12	chr11:9623600-9628600	Weak transcription	H9 Cell Line	embryonic stem cell
13	chr11:9623600-9628800	Weak transcription	HUES48 Cell Line	embryonic stem cell
14	chr11:9623600-9630400	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
15	chr11:9623600-9631400	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
16	chr11:9623600-9631600	Weak transcription	Placenta	Placenta
17	chr11:9623600-9633600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
18	chr11:9623600-9634200	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
19	chr11:9623600-9634600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
20	chr11:9623600-9634800	Weak transcription	Esophagus	oesophagus
21	chr11:9623600-9635000	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
22	chr11:9624000-9628800	Weak transcription	iPS-20b Cell Line	embryonic stem cell
23	chr11:9624200-9626600	Enhancers	GM12878-XiMat	blood
24	chr11:9624200-9628400	Weak transcription	H1 Cell Line	embryonic stem cell
25	chr11:9624200-9628400	Weak transcription	HUES6 Cell Line	embryonic stem cell
26	chr11:9624200-9628800	Weak transcription	iPS-18 Cell Line	embryonic stem cell
27	chr11:9624200-9634800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
28	chr11:9624400-9628800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
29	chr11:9624400-9634200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
30	chr11:9624400-9634200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
31	chr11:9624400-9635000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
32	chr11:9625000-9626600	Enhancers	Primary hematopoietic stem cells short term culture	blood
33	chr11:9625000-9626600	Enhancers	Dnd41	blood
34	chr11:9625600-9626000	Enhancers	Fetal Thymus	thymus
35	chr11:9625600-9628200	Weak transcription	HepG2	liver
36	chr11:9625800-9626000	Weak transcription	NHLF	lung
37	chr11:9625800-9626400	Weak transcription	K562	blood
38	chr11:9625800-9628400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
39	chr11:9625800-9630000	Weak transcription	Primary B cells from peripheral blood	blood

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links