Variant report

Variant	rs11602237
Chromosome Location	chr11:74385691-74385692
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr11:74382546..74386046-chr11:74386677..74389972,4	K562	blood:
2	chr11:74377887..74381044-chr11:74384052..74387335,4	K562	blood:
3	chr11:74383555..74386388-chr11:74394494..74397329,2	K562	blood:
4	chr11:74384288..74386885-chr11:74391965..74393932,2	K562	blood:

Variant related genes	Relation type
ENSG00000223202	Chromatin interaction

Extended variants
information (count: 11 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:5)

rs_ID	r²[population]
rs10899031	0.81[ASN][1000 genomes]
rs11822234	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.88[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17244949	0.87[AMR][1000 genomes];0.84[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs6592590	0.82[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs7104802	0.90[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2757451	chr11:73842609-74545888	Weak transcription Flanking Bivalent TSS/Enh Flanking Active TSS Strong transcription Enhancers Genic enhancers Bivalent Enhancer Active TSS Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	87 gene(s)	inside rSNPs	diseases
2	esv2759837	chr11:73842609-74557597	Flanking Active TSS Enhancers Bivalent/Poised TSS Weak transcription Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer Active TSS Strong transcription Flanking Bivalent TSS/Enh Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	88 gene(s)	inside rSNPs	diseases
3	esv34979	chr11:73878688-74533452	Enhancers Weak transcription Active TSS ZNF genes & repeats Strong transcription Flanking Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	85 gene(s)	inside rSNPs	diseases
4	esv2758277	chr11:73887567-74557597	Weak transcription Enhancers Strong transcription Active TSS ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers Flanking Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	85 gene(s)	inside rSNPs	diseases
5	nsv825994	chr11:73936667-74534455	Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer Strong transcription ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	83 gene(s)	inside rSNPs	diseases
6	nsv932190	chr11:74359867-74618935	Enhancers Weak transcription Flanking Bivalent TSS/Enh Strong transcription ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Active TSS Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	41 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:37 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:74372000-74393000	Weak transcription	Fetal Brain Female	brain
2	chr11:74381400-74386000	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
3	chr11:74381600-74394000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
4	chr11:74384000-74387600	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
5	chr11:74384200-74392400	Weak transcription	Right Ventricle	heart
6	chr11:74384400-74392600	Weak transcription	Psoas Muscle	Psoas
7	chr11:74384400-74394200	Weak transcription	Lung	lung
8	chr11:74384600-74387600	Weak transcription	Fetal Muscle Trunk	muscle
9	chr11:74384800-74387600	Weak transcription	Ovary	ovary
10	chr11:74384800-74388400	Weak transcription	Pancreas	Pancrea
11	chr11:74384800-74392000	Weak transcription	Placenta	Placenta
12	chr11:74384800-74392200	Weak transcription	Skeletal Muscle Male	skeletal muscle
13	chr11:74384800-74392600	Weak transcription	Spleen	Spleen
14	chr11:74384800-74394200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
15	chr11:74385000-74392000	Weak transcription	Skeletal Muscle Female	skeletal muscle
16	chr11:74385000-74392200	Weak transcription	Colon Smooth Muscle	Colon
17	chr11:74385200-74386000	Enhancers	Hela-S3	cervix
18	chr11:74385200-74386400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
19	chr11:74385200-74387000	Enhancers	A549	lung
20	chr11:74385200-74387800	Weak transcription	HSMMtube	muscle
21	chr11:74385200-74388400	Weak transcription	Brain Hippocampus Middle	brain
22	chr11:74385200-74388400	Weak transcription	Duodenum Smooth Muscle	Duodenum
23	chr11:74385200-74389600	Weak transcription	K562	blood
24	chr11:74385200-74389800	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
25	chr11:74385200-74392600	Weak transcription	Brain Cingulate Gyrus	brain
26	chr11:74385200-74393000	Weak transcription	Brain Anterior Caudate	brain
27	chr11:74385200-74393400	Weak transcription	Brain Angular Gyrus	brain
28	chr11:74385200-74394400	Weak transcription	NHDF-Ad	bronchial
29	chr11:74385400-74386400	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
30	chr11:74385400-74387000	Weak transcription	Fetal Muscle Leg	muscle
31	chr11:74385400-74387800	Weak transcription	HSMM	muscle
32	chr11:74385400-74388400	Weak transcription	Muscle Satellite Cultured Cells	--
33	chr11:74385400-74389600	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
34	chr11:74385400-74389600	Weak transcription	Stomach Smooth Muscle	stomach
35	chr11:74385400-74389600	Weak transcription	Osteobl	bone
36	chr11:74385400-74393000	Weak transcription	Cortex derived primary cultured neurospheres	brain
37	chr11:74385600-74386000	ZNF genes & repeats	Fetal Stomach	stomach

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links