Variant report

Variant	rs11603725
Chromosome Location	chr11:34362545-34362546
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	FOXA2	chr11:34362221-34362714	A549	lung:	n/a	chr11:34362409-34362421

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr11:34360672..34363341-chr11:34364599..34366363,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000254708	TF binding region

Extended variants
information (count: 18 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs11607456	0.87[EUR][1000 genomes]
rs1267466	0.90[CEU][hapmap]
rs1268732	0.90[CEU][hapmap];0.86[EUR][1000 genomes]
rs1270184	0.90[CEU][hapmap];0.87[EUR][1000 genomes]
rs61079956	0.84[EUR][1000 genomes]
rs72916710	0.88[EUR][1000 genomes]
rs72916711	0.88[EUR][1000 genomes]
rs72916714	0.88[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:10 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2757435	chr11:34220504-34370236	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Strong transcription Genic enhancers Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	esv2759816	chr11:34220504-34370236	Enhancers Flanking Active TSS Bivalent Enhancer Weak transcription Strong transcription Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
3	nsv897205	chr11:34248229-34507213	Enhancers Weak transcription Bivalent Enhancer Strong transcription Transcr. at gene 5' and 3' Flanking Active TSS Active TSS Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases
4	nsv897207	chr11:34253683-34621004	Weak transcription Enhancers Active TSS Flanking Active TSS Strong transcription Bivalent/Poised TSS Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	22 gene(s)	inside rSNPs	diseases
5	nsv897208	chr11:34257064-34562247	Strong transcription Weak transcription ZNF genes & repeats Enhancers Bivalent Enhancer Flanking Active TSS Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	19 gene(s)	inside rSNPs	diseases
6	nsv897209	chr11:34309519-34548906	Enhancers Weak transcription Flanking Active TSS Genic enhancers Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	19 gene(s)	inside rSNPs	diseases
7	nsv897210	chr11:34349427-34381075	Bivalent/Poised TSS Enhancers Active TSS Flanking Active TSS Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	n/a
8	nsv508622	chr11:34350559-34363184	Weak transcription Enhancers Bivalent Enhancer Flanking Active TSS Genic enhancers	TF binding region Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	n/a
9	esv1845235	chr11:34357429-34363950	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	n/a
10	esv3411338	chr11:34360548-34362657	Bivalent Enhancer Enhancers Flanking Active TSS Weak transcription	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:52 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:34351800-34363800	Weak transcription	Left Ventricle	heart
2	chr11:34352600-34363800	Weak transcription	Gastric	stomach
3	chr11:34353200-34365400	Weak transcription	Pancreas	Pancrea
4	chr11:34353400-34362800	Weak transcription	Right Atrium	heart
5	chr11:34354400-34363800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
6	chr11:34354400-34366600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
7	chr11:34354600-34362600	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
8	chr11:34354600-34363000	Weak transcription	iPS-15b Cell Line	embryonic stem cell
9	chr11:34354600-34363800	Weak transcription	NH-A	brain
10	chr11:34354800-34363000	Weak transcription	HUES6 Cell Line	embryonic stem cell
11	chr11:34359400-34364400	Enhancers	Primary monocytes fromperipheralblood	blood
12	chr11:34360200-34368400	Enhancers	Liver	Liver
13	chr11:34361000-34363400	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
14	chr11:34361000-34363400	Weak transcription	Rectal Mucosa Donor 31	rectum
15	chr11:34361000-34363800	Enhancers	Skeletal Muscle Female	skeletal muscle
16	chr11:34361200-34363000	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
17	chr11:34361200-34363000	Weak transcription	HSMMtube	muscle
18	chr11:34361200-34364400	Enhancers	Primary neutrophils fromperipheralblood	blood
19	chr11:34361200-34366400	Weak transcription	Esophagus	oesophagus
20	chr11:34361400-34363000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
21	chr11:34361400-34363600	Weak transcription	HSMM	muscle
22	chr11:34361400-34364800	Enhancers	Psoas Muscle	Psoas
23	chr11:34361400-34366200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
24	chr11:34361400-34366200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
25	chr11:34361400-34366600	Enhancers	HepG2	liver
26	chr11:34361600-34363000	Weak transcription	Fetal Muscle Leg	muscle
27	chr11:34361600-34363800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
28	chr11:34361600-34364400	Enhancers	Monocytes-CD14+_RO01746	blood
29	chr11:34361600-34366000	Weak transcription	Fetal Brain Female	brain
30	chr11:34361600-34366000	Weak transcription	Sigmoid Colon	Sigmoid Colon
31	chr11:34361600-34366400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
32	chr11:34361800-34363200	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
33	chr11:34361800-34363200	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
34	chr11:34361800-34364200	Enhancers	iPS-20b Cell Line	embryonic stem cell
35	chr11:34361800-34370800	Weak transcription	GM12878-XiMat	blood
36	chr11:34362000-34363000	Weak transcription	Right Ventricle	heart
37	chr11:34362000-34363200	Weak transcription	Duodenum Mucosa	Duodenum
38	chr11:34362000-34363200	Weak transcription	Stomach Mucosa	stomach
39	chr11:34362000-34363800	Weak transcription	Lung	lung
40	chr11:34362000-34365000	Weak transcription	Brain Germinal Matrix	brain
41	chr11:34362000-34366000	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
42	chr11:34362000-34366000	Enhancers	A549	lung
43	chr11:34362000-34366200	Weak transcription	Primary hematopoietic stem cells short term culture	blood
44	chr11:34362000-34366200	Weak transcription	Fetal Brain Male	brain
45	chr11:34362000-34366400	Weak transcription	Primary hematopoietic stem cells	blood
46	chr11:34362000-34366400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
47	chr11:34362200-34364400	Enhancers	iPS-18 Cell Line	embryonic stem cell
48	chr11:34362400-34364200	Enhancers	Fetal Adrenal Gland	Adrenal Gland
49	chr11:34362400-34364200	Enhancers	Fetal Kidney	kidney
50	chr11:34362400-34364400	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell

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