Variant report

Variant	rs11603925
Chromosome Location	chr11:107729205-107729206
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr11:107728941..107731899-chr11:107878493..107880123,2	K562	blood:
2	chr11:107459711..107461881-chr11:107729122..107732071,2	K562	blood:
3	chr11:107728987..107729897-chr17:56736078..56736791,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000166266	Chromatin interaction
ENSG00000202077	Chromatin interaction
ENSG00000110675	Chromatin interaction

Extended variants
information (count: 66 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:54)

rs_ID	r²[population]
rs10431032	0.94[AMR][1000 genomes];0.93[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs10789638	0.94[AMR][1000 genomes];0.96[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs10890766	0.84[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs10890767	0.88[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs10890768	0.89[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs10890769	0.91[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs10890770	0.94[AMR][1000 genomes];0.96[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs11212405	0.89[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs11212408	0.81[CEU][hapmap];0.95[CHB][hapmap];0.95[JPT][hapmap];0.91[AMR][1000 genomes];0.96[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs11212410	0.97[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11212411	0.87[CHB][hapmap];0.90[JPT][hapmap];0.86[AMR][1000 genomes];0.82[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs11212414	0.83[ASN][1000 genomes]
rs11212416	0.89[CHB][hapmap];0.81[JPT][hapmap];0.83[ASN][1000 genomes]
rs11212419	0.83[ASN][1000 genomes]
rs11603959	0.92[AFR][1000 genomes];0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11607450	0.80[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs12221840	0.86[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs12278174	0.90[AMR][1000 genomes];0.96[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs12417231	0.86[AMR][1000 genomes];0.82[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs12418609	0.94[AMR][1000 genomes];0.95[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs3741065	0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4466794	0.87[CHB][hapmap];0.82[JPT][hapmap];0.80[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs4587695	0.85[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs4753819	0.91[AMR][1000 genomes];0.96[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs4753820	0.86[CHB][hapmap];0.86[JPT][hapmap]
rs4753821	1.00[CEU][hapmap];0.95[CHB][hapmap];0.95[JPT][hapmap];0.96[AMR][1000 genomes];0.95[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs4754264	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.90[YRI][hapmap];0.87[AFR][1000 genomes];0.97[AMR][1000 genomes];0.95[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs4754265	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.86[YRI][hapmap];0.97[AMR][1000 genomes];0.96[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs4754267	0.89[CEU][hapmap];0.95[CHB][hapmap];0.95[JPT][hapmap];0.93[AMR][1000 genomes];0.94[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs4754268	0.84[AMR][1000 genomes];0.82[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs4754270	0.87[CHB][hapmap];0.83[JPT][hapmap];0.80[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs483463	0.83[CHB][hapmap]
rs483874	0.83[CHB][hapmap]
rs488081	0.83[CHB][hapmap];0.80[JPT][hapmap]
rs502398	0.83[CHB][hapmap];0.80[JPT][hapmap]
rs55669117	0.86[AMR][1000 genomes];0.82[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs56139321	0.86[AMR][1000 genomes];0.82[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs56218864	0.86[AMR][1000 genomes];0.82[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs564569	0.83[CHB][hapmap];0.80[JPT][hapmap]
rs565438	0.83[CHB][hapmap];0.80[JPT][hapmap]
rs566238	0.83[CHB][hapmap];0.80[JPT][hapmap]
rs578300	0.83[CHB][hapmap];0.80[JPT][hapmap]
rs58034440	0.88[AMR][1000 genomes]
rs61906861	0.91[AMR][1000 genomes];0.92[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs7102437	0.89[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs7104117	0.83[AMR][1000 genomes]
rs7109214	0.97[AMR][1000 genomes];0.95[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7121733	0.91[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs73007259	0.80[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs7941501	0.83[ASN][1000 genomes]
rs7946548	0.87[CHB][hapmap];0.83[JPT][hapmap];0.80[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs7949443	0.91[AMR][1000 genomes];0.88[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs924859	0.97[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs924860	0.97[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:12 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv533794	chr11:107349817-108093259	Bivalent Enhancer Weak transcription ZNF genes & repeats Enhancers Strong transcription Genic enhancers Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	45 gene(s)	inside rSNPs	diseases
2	nsv1039425	chr11:107468681-107895836	Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Strong transcription ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	21 gene(s)	inside rSNPs	diseases
3	nsv427899	chr11:107471544-107805894	Weak transcription Flanking Active TSS Enhancers Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Strong transcription Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	14 gene(s)	inside rSNPs	diseases
4	nsv1049524	chr11:107540937-107954011	Weak transcription Enhancers Flanking Active TSS Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	22 gene(s)	inside rSNPs	diseases
5	nsv1038581	chr11:107564274-107838386	Enhancers Flanking Active TSS Bivalent/Poised TSS Strong transcription Flanking Bivalent TSS/Enh Active TSS Weak transcription Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region miRNA target site	12 gene(s)	inside rSNPs	diseases
6	nsv898378	chr11:107580985-107847983	Flanking Active TSS Weak transcription Enhancers Active TSS Strong transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region miRNA target site	12 gene(s)	inside rSNPs	diseases
7	nsv521771	chr11:107590335-107904646	Active TSS Weak transcription Enhancers Flanking Active TSS Strong transcription Bivalent/Poised TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region miRNA target site	18 gene(s)	inside rSNPs	diseases
8	nsv1048938	chr11:107604473-107929950	Flanking Active TSS Active TSS Strong transcription Weak transcription Enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region miRNA target site	18 gene(s)	inside rSNPs	diseases
9	nsv1045388	chr11:107686808-107733498	Flanking Active TSS Active TSS Weak transcription Enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Strong transcription Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases
10	esv2750980	chr11:107720941-107970986	Weak transcription Active TSS Strong transcription Enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	16 gene(s)	inside rSNPs	diseases
11	nsv1043139	chr11:107725297-107869216	Flanking Active TSS Enhancers Active TSS Strong transcription Weak transcription Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	6 gene(s)	inside rSNPs	diseases
12	nsv898381	chr11:107729106-107847983	Weak transcription Active TSS Bivalent/Poised TSS Strong transcription Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:126 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:107727600-107730400	Active TSS	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
2	chr11:107727600-107730400	Active TSS	NHEK	skin
3	chr11:107727600-107730800	Active TSS	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
4	chr11:107727800-107729400	Bivalent Enhancer	Fetal Brain Male	brain
5	chr11:107727800-107730600	Active TSS	A549	lung
6	chr11:107727800-107730800	Active TSS	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
7	chr11:107727800-107730800	Active TSS	iPS DF 6.9 Cell Line	embryonic stem cell
8	chr11:107727800-107731000	Active TSS	ES-WA7 Cell Line	embryonic stem cell
9	chr11:107727800-107731200	Active TSS	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
10	chr11:107728000-107729600	Active TSS	Rectal Smooth Muscle	rectum
11	chr11:107728000-107729800	Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
12	chr11:107728000-107730400	Active TSS	Duodenum Smooth Muscle	Duodenum
13	chr11:107728000-107730400	Active TSS	GM12878-XiMat	blood
14	chr11:107728000-107730800	Active TSS	Esophagus	oesophagus
15	chr11:107728200-107729400	Bivalent/Poised TSS	H1 Cell Line	embryonic stem cell
16	chr11:107728200-107730400	Active TSS	iPS DF 19.11 Cell Line	embryonic stem cell
17	chr11:107728400-107729400	Bivalent/Poised TSS	HUES64 Cell Line	embryonic stem cell
18	chr11:107728400-107729400	Flanking Active TSS	Foreskin Melanocyte Primary Cells skin03	Skin
19	chr11:107728400-107729600	Bivalent/Poised TSS	ES-I3 Cell Line	embryonic stem cell
20	chr11:107728400-107729600	Bivalent/Poised TSS	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
21	chr11:107728400-107729600	Active TSS	NH-A	brain
22	chr11:107728400-107730000	Active TSS	Fetal Lung	lung
23	chr11:107728400-107730600	Active TSS	Colon Smooth Muscle	Colon
24	chr11:107728400-107730600	Active TSS	Gastric	stomach
25	chr11:107728400-107730800	Active TSS	IMR90 fetal lung fibroblasts Cell Line	lung
26	chr11:107728400-107730800	Flanking Active TSS	Primary hematopoietic stem cells	blood
27	chr11:107728400-107730800	Active TSS	Primary T killer memory cells from peripheral blood	blood
28	chr11:107728400-107730800	Active TSS	Duodenum Mucosa	Duodenum
29	chr11:107728400-107730800	Active TSS	Ovary	ovary
30	chr11:107728400-107731000	Active TSS	Foreskin Fibroblast Primary Cells skin02	Skin
31	chr11:107728600-107729400	Bivalent/Poised TSS	HUES6 Cell Line	embryonic stem cell
32	chr11:107728600-107729400	Flanking Active TSS	Primary T cells fromperipheralblood	blood
33	chr11:107728600-107729600	Active TSS	Primary hematopoietic stem cells short term culture	blood
34	chr11:107728600-107729600	Flanking Bivalent TSS/Enh	Foreskin Fibroblast Primary Cells skin01	Skin
35	chr11:107728600-107729600	Active TSS	Brain Anterior Caudate	brain
36	chr11:107728600-107729800	Active TSS	Pancreas	Pancrea
37	chr11:107728600-107730000	Flanking Bivalent TSS/Enh	H9 Derived Neuron Cultured Cells	ES cell derived
38	chr11:107728600-107730000	Flanking Bivalent TSS/Enh	Monocytes-CD14+_RO01746	blood
39	chr11:107728600-107730200	Flanking Active TSS	Stomach Smooth Muscle	stomach
40	chr11:107728600-107730400	Active TSS	Breast Myoepithelial Primary Cells	Breast
41	chr11:107728600-107730400	Active TSS	HUVEC	blood vessel
42	chr11:107728600-107730400	Active TSS	K562	blood
43	chr11:107728600-107730600	Active TSS	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
44	chr11:107728600-107730600	Active TSS	Primary T helper cells PMA-I stimulated	--
45	chr11:107728600-107730600	Active TSS	Brain Cingulate Gyrus	brain
46	chr11:107728600-107730600	Active TSS	Sigmoid Colon	Sigmoid Colon
47	chr11:107728600-107730800	Active TSS	H1 Derived Mesenchymal Stem Cells	ES cell derived
48	chr11:107728600-107730800	Active TSS	H9 Cell Line	embryonic stem cell
49	chr11:107728600-107730800	Active TSS	Fetal Kidney	kidney
50	chr11:107728600-107730800	Flanking Bivalent TSS/Enh	Fetal Stomach	stomach

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