Variant report

Variant	rs11604090
Chromosome Location	chr11:8020818-8020819
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr11:8010094..8012812-chr11:8018945..8021988,4	K562	blood:
2	chr11:8019325..8021766-chr11:8030520..8033012,2	K562	blood:

Extended variants
information (count: 5 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:4)

rs_ID	r²[population]
rs11600137	0.92[CEU][hapmap];1.00[CHB][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11607445	1.00[CHB][hapmap];1.00[AFR][1000 genomes];0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12786251	0.92[CEU][hapmap];1.00[CHB][hapmap];0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35238377	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1052808	chr11:8011647-8129191	Bivalent Enhancer Strong transcription Active TSS Weak transcription Flanking Bivalent TSS/Enh Enhancers Bivalent/Poised TSS Genic enhancers Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	11 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:120 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:8010600-8022000	Strong transcription	HUES6 Cell Line	embryonic stem cell
2	chr11:8010600-8022400	Strong transcription	Primary B cells from cord blood	blood
3	chr11:8010800-8021400	Strong transcription	HUES64 Cell Line	embryonic stem cell
4	chr11:8010800-8021400	Strong transcription	Primary T cells fromperipheralblood	blood
5	chr11:8010800-8021600	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
6	chr11:8010800-8022000	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
7	chr11:8010800-8022000	Strong transcription	Primary B cells from peripheral blood	blood
8	chr11:8010800-8022000	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
9	chr11:8010800-8033400	Weak transcription	Right Atrium	heart
10	chr11:8011000-8021800	Strong transcription	Fetal Thymus	thymus
11	chr11:8011200-8022800	Strong transcription	HSMM	muscle
12	chr11:8011400-8021200	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
13	chr11:8011400-8022000	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
14	chr11:8011400-8022000	Strong transcription	Ganglion Eminence derived primary cultured neurospheres	brain
15	chr11:8011400-8022200	Strong transcription	HMEC	breast
16	chr11:8011600-8022200	Strong transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
17	chr11:8011800-8022000	Strong transcription	Primary T helper cells fromperipheralblood	blood
18	chr11:8011800-8022000	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
19	chr11:8011800-8022000	Strong transcription	Osteobl	bone
20	chr11:8012000-8022000	Strong transcription	Muscle Satellite Cultured Cells	--
21	chr11:8012000-8022200	Strong transcription	Rectal Mucosa Donor 29	rectum
22	chr11:8012200-8022000	Strong transcription	Primary monocytes fromperipheralblood	blood
23	chr11:8012800-8021400	Strong transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
24	chr11:8012800-8022000	Strong transcription	IMR90 fetal lung fibroblasts Cell Line	lung
25	chr11:8012800-8022000	Strong transcription	Foreskin Fibroblast Primary Cells skin01	Skin
26	chr11:8012800-8022000	Strong transcription	Duodenum Mucosa	Duodenum
27	chr11:8012800-8022000	Strong transcription	Left Ventricle	heart
28	chr11:8012800-8022200	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
29	chr11:8012800-8022200	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
30	chr11:8012800-8022200	Strong transcription	Fetal Lung	lung
31	chr11:8012800-8022200	Strong transcription	GM12878-XiMat	blood
32	chr11:8012800-8022200	Strong transcription	Monocytes-CD14+_RO01746	blood
33	chr11:8012800-8022400	Strong transcription	Liver	Liver
34	chr11:8012800-8022600	Strong transcription	A549	lung
35	chr11:8012800-8022800	Strong transcription	Fetal Muscle Leg	muscle
36	chr11:8013000-8021200	Strong transcription	Placenta	Placenta
37	chr11:8013000-8021400	Strong transcription	ES-UCSF4 Cell Line	embryonic stem cell
38	chr11:8013000-8021800	Strong transcription	Fetal Brain Female	brain
39	chr11:8013000-8021800	Strong transcription	Fetal Muscle Trunk	muscle
40	chr11:8013000-8022000	Strong transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
41	chr11:8013000-8022000	Strong transcription	Primary T cells from cord blood	blood
42	chr11:8013000-8022000	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
43	chr11:8013000-8022000	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
44	chr11:8013000-8022200	Strong transcription	Skeletal Muscle Male	skeletal muscle
45	chr11:8013200-8022000	Strong transcription	Lung	lung
46	chr11:8013200-8022000	Strong transcription	Thymus	Thymus
47	chr11:8013200-8022400	Strong transcription	Skeletal Muscle Female	skeletal muscle
48	chr11:8013400-8022000	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
49	chr11:8013400-8022000	Strong transcription	Sigmoid Colon	Sigmoid Colon
50	chr11:8016600-8025600	Weak transcription	Fetal Heart	heart

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