Variant report

Variant	rs11604100
Chromosome Location	chr11:121096865-121096866
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 7 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:6)

rs_ID	r²[population]
rs12278110	0.91[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs1231418	0.87[ASN][1000 genomes]
rs12417339	0.88[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs520868	0.87[ASN][1000 genomes]
rs588209	0.87[ASN][1000 genomes]
rs612804	0.87[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1042295	chr11:121072853-121177079	Weak transcription Flanking Active TSS Enhancers Active TSS Strong transcription Bivalent/Poised TSS Bivalent Enhancer Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:121096600-121099600	Weak transcription	Liver	Liver
2	chr11:121096800-121097600	Weak transcription	Fetal Intestine Small	intestine
3	chr11:121096800-121098200	ZNF genes & repeats	iPS-20b Cell Line	embryonic stem cell
4	chr11:121096800-121101000	Weak transcription	Fetal Intestine Large	intestine

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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