Variant report

Variant	rs11604798
Chromosome Location	chr11:64865666-64865667
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:12)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:12 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr11:64570549..64572322-chr11:64863262..64865763,3	MCF-7	breast:
2	chr11:64793292..64796781-chr11:64862367..64865846,4	K562	blood:
3	chr11:64793819..64796993-chr11:64862794..64865846,5	K562	blood:
4	chr11:64779913..64786139-chr11:64862018..64866625,10	K562	blood:
5	chr11:64764254..64767473-chr11:64863464..64866192,3	K562	blood:
6	chr11:64779401..64787584-chr11:64862745..64867550,9	MCF-7	breast:
7	chr11:64806669..64810557-chr11:64862016..64868359,8	K562	blood:
8	chr11:64864336..64865901-chr11:64948929..64951188,2	MCF-7	breast:
9	chr11:64806772..64810496-chr11:64862454..64866792,5	K562	blood:
10	chr11:64806644..64812839-chr11:64862132..64865938,9	MCF-7	breast:
11	chr11:64860579..64868255-chr11:64873377..64881831,25	K562	blood:
12	chr11:64862526..64865749-chr11:64882167..64886670,6	K562	blood:

No data

Variant related genes	Relation type
ENSG00000168062	Chromatin interaction
ENSG00000254614	Chromatin interaction
ENSG00000270775	Chromatin interaction
ENSG00000273003	Chromatin interaction
ENSG00000149809	Chromatin interaction
ENSG00000168067	Chromatin interaction
ENSG00000174276	Chromatin interaction
ENSG00000168061	Chromatin interaction
ENSG00000254501	Chromatin interaction
ENSG00000110025	Chromatin interaction
ENSG00000213465	Chromatin interaction
ENSG00000255173	Chromatin interaction
ENSG00000149823	Chromatin interaction
ENSG00000014216	Chromatin interaction

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs1046912	0.86[ASN][1000 genomes]
rs10895987	0.84[CHD][hapmap]
rs11556920	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];0.86[ASN][1000 genomes]
rs11604099	0.87[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs11604621	0.81[AMR][1000 genomes]
rs33981236	0.86[ASN][1000 genomes]
rs35251366	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[TSI][hapmap];0.86[ASN][1000 genomes]
rs769442	1.00[CHB][hapmap];0.91[CHD][hapmap];1.00[GIH][hapmap];0.91[MKK][hapmap];1.00[TSI][hapmap];1.00[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs9971407	0.84[CHD][hapmap]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv526181	chr11:64638041-65257329	Flanking Active TSS Enhancers Strong transcription Active TSS Weak transcription Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	1539 gene(s)	inside rSNPs	diseases
2	nsv897709	chr11:64772545-64870779	Enhancers Flanking Active TSS Weak transcription Strong transcription Genic enhancers Transcr. at gene 5' and 3' Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	64 gene(s)	inside rSNPs	diseases
3	nsv897710	chr11:64772545-64885445	Flanking Active TSS Strong transcription Genic enhancers Enhancers Weak transcription Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	99 gene(s)	inside rSNPs	diseases
4	nsv897711	chr11:64772545-64900270	Genic enhancers Weak transcription Strong transcription Enhancers Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	109 gene(s)	inside rSNPs	diseases
5	nsv897712	chr11:64856695-64882789	Weak transcription Flanking Bivalent TSS/Enh Flanking Active TSS Enhancers Strong transcription Genic enhancers Transcr. at gene 5' and 3' Active TSS Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	67 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:124 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:64864200-64879400	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
2	chr11:64864400-64874600	Weak transcription	Aorta	Aorta
3	chr11:64864400-64878000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
4	chr11:64864600-64865800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
5	chr11:64864600-64866000	Genic enhancers	Primary T helper cells fromperipheralblood	blood
6	chr11:64864600-64866400	Weak transcription	Lung	lung
7	chr11:64864600-64869000	Weak transcription	Left Ventricle	heart
8	chr11:64864600-64873000	Weak transcription	H1 Cell Line	embryonic stem cell
9	chr11:64864600-64874600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
10	chr11:64864600-64876400	Weak transcription	H9 Cell Line	embryonic stem cell
11	chr11:64864800-64865800	Weak transcription	HUES6 Cell Line	embryonic stem cell
12	chr11:64864800-64865800	Enhancers	Primary T killer naive cells fromperipheralblood	blood
13	chr11:64864800-64865800	Enhancers	Liver	Liver
14	chr11:64864800-64866200	Strong transcription	iPS-20b Cell Line	embryonic stem cell
15	chr11:64864800-64866200	Weak transcription	Monocytes-CD14+_RO01746	blood
16	chr11:64864800-64866400	Genic enhancers	Primary T killer memory cells from peripheral blood	blood
17	chr11:64864800-64866400	Weak transcription	Psoas Muscle	Psoas
18	chr11:64864800-64866800	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
19	chr11:64864800-64866800	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
20	chr11:64864800-64867400	Enhancers	Skeletal Muscle Male	skeletal muscle
21	chr11:64864800-64867800	Weak transcription	Cortex derived primary cultured neurospheres	brain
22	chr11:64864800-64868600	Weak transcription	Osteobl	bone
23	chr11:64864800-64869000	Weak transcription	Pancreas	Pancrea
24	chr11:64864800-64869200	Weak transcription	Right Atrium	heart
25	chr11:64864800-64869200	Weak transcription	Right Ventricle	heart
26	chr11:64864800-64869200	Weak transcription	NH-A	brain
27	chr11:64864800-64869600	Weak transcription	Muscle Satellite Cultured Cells	--
28	chr11:64864800-64869600	Weak transcription	HUVEC	blood vessel
29	chr11:64864800-64869800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
30	chr11:64864800-64870600	Weak transcription	HSMM	muscle
31	chr11:64864800-64875000	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
32	chr11:64864800-64875000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
33	chr11:64864800-64875200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
34	chr11:64864800-64876000	Weak transcription	Rectal Smooth Muscle	rectum
35	chr11:64864800-64876200	Weak transcription	iPS-18 Cell Line	embryonic stem cell
36	chr11:64864800-64876400	Weak transcription	A549	lung
37	chr11:64864800-64878200	Weak transcription	NHDF-Ad	bronchial
38	chr11:64864800-64878600	Weak transcription	Small Intestine	intestine
39	chr11:64864800-64879400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
40	chr11:64865000-64865800	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
41	chr11:64865000-64865800	Enhancers	Primary T cells from cord blood	blood
42	chr11:64865000-64865800	Enhancers	Brain Inferior Temporal Lobe	brain
43	chr11:64865000-64865800	Weak transcription	Fetal Brain Male	brain
44	chr11:64865000-64865800	Weak transcription	Sigmoid Colon	Sigmoid Colon
45	chr11:64865000-64865800	Weak transcription	K562	blood
46	chr11:64865000-64865800	Weak transcription	NHLF	lung
47	chr11:64865000-64866200	Genic enhancers	Primary T helper cells PMA-I stimulated	--
48	chr11:64865000-64866400	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
49	chr11:64865000-64866800	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
50	chr11:64865000-64866800	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin

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