Variant report

Variant	rs11605307
Chromosome Location	chr11:119931576-119931577
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 50 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:46)

rs_ID	r²[population]
rs1010260	0.91[AMR][1000 genomes];0.87[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs10502234	0.90[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs10892518	0.90[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs10892522	0.87[AMR][1000 genomes];0.80[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs10892524	0.97[AMR][1000 genomes];0.86[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10892525	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10892527	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs11217650	0.90[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs11217651	0.90[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs11217653	0.90[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs11217654	0.90[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs11217664	0.89[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11217665	0.80[ASN][1000 genomes]
rs11217666	0.80[ASN][1000 genomes]
rs11493812	0.90[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs11512472	0.90[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs11605106	0.90[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs11607618	0.90[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs11607997	0.97[EUR][1000 genomes]
rs11608135	0.86[ASN][1000 genomes]
rs12225953	0.80[ASN][1000 genomes]
rs12362929	0.90[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs12363889	0.90[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs12365908	0.90[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs12790374	0.90[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs12792065	0.90[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs12799875	0.90[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs12800482	0.90[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs12800844	0.90[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs1319166	0.96[EUR][1000 genomes]
rs1320685	0.89[AFR][1000 genomes]
rs1452840	0.90[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs1452841	0.90[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs1452842	0.90[AMR][1000 genomes];0.86[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1939331	0.90[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs1939333	0.83[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs1939334	0.90[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs1942011	0.90[AMR][1000 genomes];0.86[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1960536	0.90[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs1989151	0.97[AMR][1000 genomes];0.87[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs61897925	0.90[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs662146	0.97[AMR][1000 genomes];0.87[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs675331	0.97[AMR][1000 genomes];0.87[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs681454	0.97[AMR][1000 genomes];0.87[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs965312	0.93[EUR][1000 genomes]
rs972534	0.90[AMR][1000 genomes];0.86[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1054057	chr11:119781953-120519770	Enhancers Strong transcription Weak transcription Genic enhancers Flanking Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	31 gene(s)	inside rSNPs	diseases
2	nsv541178	chr11:119781953-120519770	Weak transcription Enhancers Strong transcription Bivalent Enhancer Bivalent/Poised TSS Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	31 gene(s)	inside rSNPs	diseases
3	nsv832285	chr11:119789595-119957724	Enhancers Bivalent Enhancer Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
4	nsv508657	chr11:119891578-119971212	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:25 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:119922600-119936000	Enhancers	Breast Myoepithelial Primary Cells	Breast
2	chr11:119925000-119934200	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
3	chr11:119927800-119932800	Weak transcription	Brain Anterior Caudate	brain
4	chr11:119927800-119932800	Weak transcription	Brain Hippocampus Middle	brain
5	chr11:119928400-119932200	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
6	chr11:119928800-119932400	Weak transcription	Placenta Amnion	Placenta Amnion
7	chr11:119929000-119932200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
8	chr11:119929000-119932400	Weak transcription	Fetal Brain Male	brain
9	chr11:119929000-119932400	Weak transcription	Fetal Brain Female	brain
10	chr11:119929200-119932600	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
11	chr11:119929200-119932800	Weak transcription	HMEC	breast
12	chr11:119929400-119931600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
13	chr11:119929400-119932800	Weak transcription	Esophagus	oesophagus
14	chr11:119929400-119932800	Weak transcription	NHEK	skin
15	chr11:119929400-119934000	Enhancers	HUES64 Cell Line	embryonic stem cell
16	chr11:119929600-119932000	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
17	chr11:119929600-119932000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
18	chr11:119929600-119932200	Weak transcription	Brain Germinal Matrix	brain
19	chr11:119929800-119931800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
20	chr11:119930200-119932200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
21	chr11:119930600-119931600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
22	chr11:119930600-119932200	Weak transcription	H1 Cell Line	embryonic stem cell
23	chr11:119930600-119932600	Weak transcription	HUES6 Cell Line	embryonic stem cell
24	chr11:119931400-119933200	Enhancers	HSMMtube	muscle
25	chr11:119931400-119934000	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived

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