Variant report

Variant	rs116053459
Chromosome Location	chr5:57487122-57487123
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 1 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv969959	chr5:57486620-57495174	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:19 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:57483000-57488400	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
2	chr5:57484200-57488200	Enhancers	Hela-S3	cervix
3	chr5:57484400-57487400	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
4	chr5:57484600-57487600	Flanking Active TSS	A549	lung
5	chr5:57485400-57487800	Weak transcription	Adipose Nuclei	Adipose
6	chr5:57485800-57490400	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
7	chr5:57486000-57487200	Weak transcription	HMEC	breast
8	chr5:57486000-57487200	Weak transcription	Osteobl	bone
9	chr5:57486000-57488200	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
10	chr5:57486400-57487400	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
11	chr5:57486800-57487200	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
12	chr5:57486800-57488000	Enhancers	Breast Myoepithelial Primary Cells	Breast
13	chr5:57487000-57487200	Enhancers	Muscle Satellite Cultured Cells	--
14	chr5:57487000-57487200	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
15	chr5:57487000-57487200	Enhancers	HSMMtube	muscle
16	chr5:57487000-57487400	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
17	chr5:57487000-57487400	Enhancers	Liver	Liver
18	chr5:57487000-57487600	Enhancers	Brain Hippocampus Middle	brain
19	chr5:57487000-57487800	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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