Variant report

Variant	rs11605632
Chromosome Location	chr11:64981587-64981588
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr11:64981438..64983077-chr11:65020117..65022507,2	MCF-7	breast:
2	chr11:64981559..64983157-chr11:64987692..64989765,2	MCF-7	breast:
3	chr11:64936901..64940048-chr11:64977014..64981623,6	K562	blood:

Variant related genes	Relation type
ENSG00000197847	Chromatin interaction
ENSG00000204710	Chromatin interaction

Extended variants
information (count: 11 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs11605576	0.98[ASN][1000 genomes]
rs12416930	0.81[ASN][1000 genomes]
rs12417272	0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs12420456	0.80[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs17881590	0.89[ASN][1000 genomes]
rs34007842	0.81[ASN][1000 genomes]
rs58858596	0.82[ASN][1000 genomes]
rs67698652	0.82[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv526181	chr11:64638041-65257329	Flanking Active TSS Enhancers Strong transcription Active TSS Weak transcription Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	1539 gene(s)	inside rSNPs	diseases
2	nsv897713	chr11:64915042-65000719	Flanking Active TSS Weak transcription Strong transcription Enhancers Genic enhancers Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	42 gene(s)	inside rSNPs	diseases
3	nsv832190	chr11:64978144-65127613	Flanking Active TSS Weak transcription Enhancers Genic enhancers Bivalent Enhancer Strong transcription Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	48 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:109 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:64950600-64992400	Weak transcription	Right Atrium	heart
2	chr11:64952400-64992800	Weak transcription	Fetal Heart	heart
3	chr11:64973800-64992600	Weak transcription	Fetal Kidney	kidney
4	chr11:64975800-64982400	Genic enhancers	Fetal Intestine Small	intestine
5	chr11:64976600-64992600	Weak transcription	Psoas Muscle	Psoas
6	chr11:64977400-64998400	Weak transcription	Small Intestine	intestine
7	chr11:64977600-64993200	Weak transcription	Pancreatic Islets	Pancreatic Islet
8	chr11:64978200-64982800	Weak transcription	Fetal Lung	lung
9	chr11:64978200-64986800	Weak transcription	HepG2	liver
10	chr11:64978400-64992200	Weak transcription	Stomach Mucosa	stomach
11	chr11:64978400-64992800	Weak transcription	HSMM	muscle
12	chr11:64978600-64992800	Weak transcription	HSMMtube	muscle
13	chr11:64978800-64987000	Weak transcription	NHDF-Ad	bronchial
14	chr11:64979000-64981600	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
15	chr11:64979200-64983000	Weak transcription	Brain Anterior Caudate	brain
16	chr11:64979200-64983400	Enhancers	Primary hematopoietic stem cells	blood
17	chr11:64979200-64986400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
18	chr11:64979200-64987000	Weak transcription	Muscle Satellite Cultured Cells	--
19	chr11:64979200-64992400	Weak transcription	Rectal Mucosa Donor 29	rectum
20	chr11:64979200-64993000	Weak transcription	Aorta	Aorta
21	chr11:64979400-64981800	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
22	chr11:64979400-64982200	Enhancers	ES-I3 Cell Line	embryonic stem cell
23	chr11:64979400-64984400	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
24	chr11:64979400-64987000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
25	chr11:64979400-64992400	Weak transcription	A549	lung
26	chr11:64979600-64981600	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
27	chr11:64979600-64981800	Enhancers	ES-WA7 Cell Line	embryonic stem cell
28	chr11:64979600-64984800	Weak transcription	Fetal Brain Female	brain
29	chr11:64979600-64986400	Weak transcription	Stomach Smooth Muscle	stomach
30	chr11:64979600-64990600	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
31	chr11:64979600-64992200	Weak transcription	NHEK	skin
32	chr11:64979800-64981600	Enhancers	Placenta	Placenta
33	chr11:64979800-64982200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
34	chr11:64979800-64983200	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
35	chr11:64979800-64984800	Weak transcription	Brain Germinal Matrix	brain
36	chr11:64979800-64984800	Weak transcription	Rectal Mucosa Donor 31	rectum
37	chr11:64979800-64989800	Weak transcription	Skeletal Muscle Male	skeletal muscle
38	chr11:64979800-64992400	Weak transcription	Duodenum Smooth Muscle	Duodenum
39	chr11:64979800-64993000	Weak transcription	Ovary	ovary
40	chr11:64980000-64981600	Weak transcription	Right Ventricle	heart
41	chr11:64980000-64981800	Genic enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
42	chr11:64980000-64981800	Enhancers	Spleen	Spleen
43	chr11:64980000-64982000	Enhancers	Primary monocytes fromperipheralblood	blood
44	chr11:64980000-64982200	Enhancers	Fetal Thymus	thymus
45	chr11:64980000-64983400	Enhancers	Primary neutrophils fromperipheralblood	blood
46	chr11:64980000-64986000	Weak transcription	Lung	lung
47	chr11:64980000-64989800	Weak transcription	Left Ventricle	heart
48	chr11:64980000-64992200	Weak transcription	HMEC	breast
49	chr11:64980200-64982000	Enhancers	Fetal Muscle Trunk	muscle
50	chr11:64980200-64982200	Enhancers	Primary T helper naive cells fromperipheralblood	blood

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