Variant report

Variant	rs11605956
Chromosome Location	chr11:26212866-26212867
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 10 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs11603715	0.85[ASN][1000 genomes]
rs12799556	0.85[ASN][1000 genomes]
rs17308831	0.85[ASN][1000 genomes]
rs34277864	0.85[ASN][1000 genomes]
rs34417030	0.85[ASN][1000 genomes]
rs34566602	0.89[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs34859438	0.85[ASN][1000 genomes]
rs35111424	0.84[ASN][1000 genomes]
rs35313719	0.84[AMR][1000 genomes];0.85[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832094	chr11:26130733-26292782	Weak transcription Flanking Active TSS Enhancers Genic enhancers Active TSS Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:15 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:26210400-26214200	Weak transcription	Placenta	Placenta
2	chr11:26211000-26216200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
3	chr11:26211200-26216600	Weak transcription	Fetal Kidney	kidney
4	chr11:26211600-26214800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
5	chr11:26211600-26216800	Weak transcription	Osteobl	bone
6	chr11:26211600-26220600	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
7	chr11:26211800-26220200	Weak transcription	NHLF	lung
8	chr11:26212400-26217200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
9	chr11:26212400-26225000	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
10	chr11:26212600-26213200	Enhancers	Primary B cells from peripheral blood	blood
11	chr11:26212600-26213200	Transcr. at gene 5' and 3'	Foreskin Fibroblast Primary Cells skin01	Skin
12	chr11:26212600-26213200	Enhancers	NHDF-Ad	bronchial
13	chr11:26212600-26217000	Weak transcription	Adipose Nuclei	Adipose
14	chr11:26212600-26219400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
15	chr11:26212600-26220600	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links