Variant report

Variant	rs11606516
Chromosome Location	chr11:9090408-9090409
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr11:9088886..9093572-chr11:9094471..9099536,5	MCF-7	breast:
2	chr11:9085105..9088993-chr11:9089153..9093371,4	K562	blood:
3	chr11:9088310..9090421-chr11:9092696..9094493,2	K562	blood:

Variant related genes	Relation type
ENSG00000175356	Chromatin interaction

Extended variants
information (count: 12 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:4)

rs_ID	r²[population]
rs11608223	0.81[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs2647530	0.86[CHB][hapmap]
rs3763900	0.83[ASN][1000 genomes]
rs7929797	0.86[CHB][hapmap]

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3413845	chr11:8887279-9285127	Enhancers Transcr. at gene 5' and 3' Weak transcription Flanking Active TSS Strong transcription Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	47 gene(s)	inside rSNPs	diseases
2	nsv896984	chr11:8988550-9090408	Bivalent Enhancer Bivalent/Poised TSS Enhancers Flanking Bivalent TSS/Enh Weak transcription Strong transcription Flanking Active TSS Active TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
3	esv33264	chr11:9007612-9311131	Enhancers Weak transcription Strong transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	29 gene(s)	inside rSNPs	diseases
4	nsv896985	chr11:9013002-9152463	Weak transcription Enhancers Bivalent/Poised TSS Bivalent Enhancer Flanking Active TSS Active TSS Strong transcription Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	18 gene(s)	inside rSNPs	diseases
5	nsv467704	chr11:9059192-9125301	Weak transcription Enhancers Strong transcription Bivalent/Poised TSS Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Flanking Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	8 gene(s)	inside rSNPs	diseases
6	nsv553454	chr11:9059192-9125301	Enhancers Weak transcription Bivalent/Poised TSS Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Active TSS Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	8 gene(s)	inside rSNPs	diseases
7	nsv467706	chr11:9077652-9114999	Enhancers Weak transcription Active TSS Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	7 gene(s)	inside rSNPs	diseases
8	nsv553455	chr11:9077652-9114999	Flanking Bivalent TSS/Enh Enhancers Weak transcription Active TSS ZNF genes & repeats Bivalent Enhancer Flanking Active TSS Bivalent/Poised TSS Strong transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:46 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:9058400-9099800	Weak transcription	Aorta	Aorta
2	chr11:9069000-9092400	Weak transcription	Fetal Intestine Small	intestine
3	chr11:9070200-9097200	Weak transcription	Brain Cingulate Gyrus	brain
4	chr11:9070400-9098400	Weak transcription	Colonic Mucosa	Colon
5	chr11:9070600-9091600	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
6	chr11:9075000-9092600	Weak transcription	Rectal Mucosa Donor 29	rectum
7	chr11:9078600-9092800	Weak transcription	HUES64 Cell Line	embryonic stem cell
8	chr11:9078800-9098000	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
9	chr11:9079000-9091200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
10	chr11:9079000-9096200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
11	chr11:9081400-9092400	Weak transcription	Duodenum Mucosa	Duodenum
12	chr11:9081600-9091400	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
13	chr11:9086600-9094600	Weak transcription	Fetal Thymus	thymus
14	chr11:9087200-9091000	Strong transcription	Breast Myoepithelial Primary Cells	Breast
15	chr11:9087200-9092000	Strong transcription	Fetal Stomach	stomach
16	chr11:9087200-9093400	Strong transcription	Fetal Muscle Leg	muscle
17	chr11:9088200-9112400	Weak transcription	HSMM	muscle
18	chr11:9088400-9090800	Weak transcription	Rectal Smooth Muscle	rectum
19	chr11:9088400-9090800	Weak transcription	Spleen	Spleen
20	chr11:9088400-9091000	Weak transcription	Placenta	Placenta
21	chr11:9088400-9091600	Weak transcription	Fetal Intestine Large	intestine
22	chr11:9088400-9092600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
23	chr11:9088400-9092800	Weak transcription	HUES48 Cell Line	embryonic stem cell
24	chr11:9088400-9092800	Weak transcription	HUES6 Cell Line	embryonic stem cell
25	chr11:9088400-9092800	Weak transcription	Gastric	stomach
26	chr11:9088400-9093000	Weak transcription	H1 Cell Line	embryonic stem cell
27	chr11:9088400-9093000	Weak transcription	iPS-18 Cell Line	embryonic stem cell
28	chr11:9088400-9094400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
29	chr11:9088400-9097200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
30	chr11:9088400-9100200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
31	chr11:9088600-9091600	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
32	chr11:9088600-9092800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
33	chr11:9088600-9093400	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
34	chr11:9088600-9094400	Enhancers	Brain Germinal Matrix	brain
35	chr11:9088800-9091600	Weak transcription	Fetal Brain Male	brain
36	chr11:9088800-9097000	Weak transcription	Colon Smooth Muscle	Colon
37	chr11:9089000-9090800	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
38	chr11:9089400-9092200	Weak transcription	Rectal Mucosa Donor 31	rectum
39	chr11:9089600-9090600	Strong transcription	Pancreas	Pancrea
40	chr11:9089600-9091800	Strong transcription	Adipose Nuclei	Adipose
41	chr11:9089600-9092000	Strong transcription	Fetal Muscle Trunk	muscle
42	chr11:9089600-9092400	Strong transcription	Stomach Smooth Muscle	stomach
43	chr11:9089600-9093000	Strong transcription	Fetal Lung	lung
44	chr11:9089800-9097000	Weak transcription	Left Ventricle	heart
45	chr11:9090200-9091000	Strong transcription	Cortex derived primary cultured neurospheres	brain
46	chr11:9090200-9099200	Weak transcription	Duodenum Smooth Muscle	Duodenum

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