Variant report

Variant	rs116067299
Chromosome Location	chr8:96090258-96090259
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	BCL3	chr8:96090184-96090707	GM12878	blood:	n/a	n/a
2	NFIC	chr8:96090098-96090790	GM12878	blood:	n/a	n/a
3	CTCF	chr8:96090160-96090310	GM12865	blood:	n/a	n/a
4	MTA3	chr8:96089933-96090708	GM12878	blood:	n/a	n/a
5	MEF2A	chr8:96090188-96090707	GM12878	blood:	n/a	n/a
6	EBF1	chr8:96090225-96090728	GM12878	blood:	n/a	chr8:96090431-96090442 chr8:96090432-96090442
7	POU2F2	chr8:96090240-96090701	GM12891	blood:	n/a	n/a
8	PAX5	chr8:96090217-96090693	GM12878	blood:	n/a	n/a
9	EBF1	chr8:96090247-96090576	GM12878	blood:	n/a	chr8:96090431-96090442 chr8:96090432-96090442
10	NFIC	chr8:96090012-96090814	GM12878	blood:	n/a	n/a
11	PML	chr8:96090076-96090774	GM12878	blood:	n/a	n/a
12	RUNX3	chr8:96090115-96090769	GM12878	blood:	n/a	n/a
13	POU2F2	chr8:96090234-96090752	GM12891	blood:	n/a	n/a
14	ATF2	chr8:96090166-96090783	GM12878	blood:	n/a	n/a
15	FOXM1	chr8:96090162-96090765	GM12878	blood:	n/a	n/a
16	MTA3	chr8:96090240-96090772	GM12878	blood:	n/a	n/a
17	STAT5A	chr8:96090239-96090735	GM12878	blood:	n/a	n/a
18	PAX5	chr8:96090240-96090588	GM12878	blood:	n/a	n/a
19	BCLAF1	chr8:96090180-96090741	GM12878	blood:	n/a	n/a
20	RUNX3	chr8:96089754-96090840	GM12878	blood:	n/a	n/a
21	EBF1	chr8:96090212-96090644	GM12878	blood:	n/a	chr8:96090431-96090442 chr8:96090432-96090442
22	STAT5A	chr8:96090221-96090684	GM12878	blood:	n/a	n/a

No.	Distal block	Cell Line	Cell type
1	chr8:96087997..96090482-chr8:96096727..96098708,2	K562	blood:
2	chr8:96081390..96083933-chr8:96088865..96090424,2	K562	blood:
3	chr8:96082201..96091738-chr8:96143838..96148400,13	MCF-7	breast:

Variant related genes	Relation type
MIR3150A	TF binding region
ENSG00000175895	Chromatin interaction

Extended variants
information (count: 5 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1017301	chr8:95273503-96248352	Weak transcription Enhancers Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Strong transcription Bivalent Enhancer Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	87 gene(s)	inside rSNPs	diseases
2	nsv539680	chr8:95273503-96248352	Enhancers Weak transcription Strong transcription Flanking Active TSS Genic enhancers Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	87 gene(s)	inside rSNPs	diseases
3	nsv508520	chr8:95939373-96140068	Enhancers Weak transcription Strong transcription Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	35 gene(s)	inside rSNPs	diseases
4	nsv891205	chr8:96062601-96115476	Strong transcription Weak transcription Enhancers Bivalent/Poised TSS Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	26 gene(s)	inside rSNPs	diseases
5	esv3322914	chr8:96090176-96094674	Enhancers Weak transcription	TF binding region Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:26 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:96080200-96101800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
2	chr8:96085600-96098200	Weak transcription	Gastric	stomach
3	chr8:96086000-96092200	Weak transcription	Breast Myoepithelial Primary Cells	Breast
4	chr8:96086000-96098200	Weak transcription	Thymus	Thymus
5	chr8:96087400-96091200	Enhancers	Primary B cells from cord blood	blood
6	chr8:96088000-96090400	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
7	chr8:96088000-96090400	Weak transcription	Sigmoid Colon	Sigmoid Colon
8	chr8:96088000-96090800	Weak transcription	Brain Angular Gyrus	brain
9	chr8:96088200-96098000	Weak transcription	Fetal Kidney	kidney
10	chr8:96088600-96093800	Weak transcription	A549	lung
11	chr8:96088600-96097600	Weak transcription	Monocytes-CD14+_RO01746	blood
12	chr8:96088600-96098000	Weak transcription	K562	blood
13	chr8:96088800-96093600	Weak transcription	Fetal Intestine Small	intestine
14	chr8:96088800-96097000	Weak transcription	Primary neutrophils fromperipheralblood	blood
15	chr8:96088800-96097600	Weak transcription	Placenta	Placenta
16	chr8:96088800-96098000	Weak transcription	HepG2	liver
17	chr8:96089200-96090400	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
18	chr8:96089200-96091200	Enhancers	Primary B cells from peripheral blood	blood
19	chr8:96089400-96091200	Enhancers	GM12878-XiMat	blood
20	chr8:96089800-96090400	Enhancers	Spleen	Spleen
21	chr8:96089800-96091200	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
22	chr8:96090000-96090600	Enhancers	Primary hematopoietic stem cells short term culture	blood
23	chr8:96090000-96090800	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
24	chr8:96090200-96090400	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
25	chr8:96090200-96090400	Weak transcription	Pancreas	Pancrea
26	chr8:96090200-96090600	Weak transcription	Brain Hippocampus Middle	brain

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links