Variant report

Variant	rs11607934
Chromosome Location	chr11:18689168-18689169
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr11:18654698..18657524-chr11:18688127..18689998,2	K562	blood:

Variant related genes	Relation type
ENSG00000179119	Chromatin interaction

Extended variants
information (count: 20 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs10466423	0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs10832958	0.86[JPT][hapmap]
rs11024731	0.86[JPT][hapmap]
rs12277203	0.94[AMR][1000 genomes];0.93[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs12787397	0.95[CEU][hapmap];1.00[CHB][hapmap];0.93[JPT][hapmap];0.98[AMR][1000 genomes];0.94[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs12787623	1.00[CEU][hapmap];1.00[CHB][hapmap];0.92[JPT][hapmap];0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs12792736	1.00[CEU][hapmap];1.00[CHB][hapmap];0.93[JPT][hapmap];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs12808591	0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs12808592	0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs1550868	1.00[CEU][hapmap];1.00[CHB][hapmap];0.93[JPT][hapmap];0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs28848509	0.83[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs35024874	1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs61884743	0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs61884744	0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs9705036	0.98[AMR][1000 genomes];0.94[EUR][1000 genomes];0.92[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv949248	chr11:17791822-18692687	Weak transcription Flanking Active TSS Strong transcription Enhancers Genic enhancers Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	156 gene(s)	inside rSNPs	diseases
2	nsv553633	chr11:18311701-19058451	Weak transcription Strong transcription Active TSS Enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	144 gene(s)	inside rSNPs	diseases
3	nsv1042155	chr11:18435855-18697576	Enhancers Weak transcription Strong transcription Active TSS Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	72 gene(s)	inside rSNPs	diseases
4	nsv1046886	chr11:18547568-18781448	Flanking Active TSS Weak transcription Strong transcription Active TSS Enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	75 gene(s)	inside rSNPs	diseases
5	nsv540956	chr11:18547568-18781448	Weak transcription Strong transcription Enhancers Active TSS Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	75 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:22 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:18687000-18690000	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
2	chr11:18687000-18719800	Weak transcription	Ovary	ovary
3	chr11:18687200-18690800	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
4	chr11:18687400-18690800	Weak transcription	Primary T helper naive cells from peripheral blood	blood
5	chr11:18687600-18689800	Weak transcription	Primary T helper cells PMA-I stimulated	--
6	chr11:18687600-18690800	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
7	chr11:18687800-18690200	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
8	chr11:18687800-18690600	Weak transcription	Primary T helper cells fromperipheralblood	blood
9	chr11:18687800-18690800	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
10	chr11:18688200-18689400	Enhancers	Primary monocytes fromperipheralblood	blood
11	chr11:18688200-18689400	Enhancers	Monocytes-CD14+_RO01746	blood
12	chr11:18688400-18689200	Enhancers	Primary hematopoietic stem cells short term culture	blood
13	chr11:18688400-18689200	Enhancers	Pancreas	Pancrea
14	chr11:18688400-18690200	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
15	chr11:18688600-18689200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
16	chr11:18688800-18689800	Weak transcription	A549	lung
17	chr11:18689000-18689400	Enhancers	Small Intestine	intestine
18	chr11:18689000-18690000	Weak transcription	Fetal Intestine Small	intestine
19	chr11:18689000-18690000	Weak transcription	K562	blood
20	chr11:18689000-18690200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
21	chr11:18689000-18690200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
22	chr11:18689000-18691600	Enhancers	Stomach Mucosa	stomach

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