Variant report

Variant	rs11607987
Chromosome Location	chr11:119856928-119856929
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 10 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:4)

rs_ID	r²[population]
rs1944499	1.00[ASN][1000 genomes]
rs1944511	1.00[ASN][1000 genomes]
rs7106980	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7129717	0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1054057	chr11:119781953-120519770	Enhancers Strong transcription Weak transcription Genic enhancers Flanking Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	31 gene(s)	inside rSNPs	diseases
2	nsv541178	chr11:119781953-120519770	Weak transcription Enhancers Strong transcription Bivalent Enhancer Bivalent/Poised TSS Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	31 gene(s)	inside rSNPs	diseases
3	nsv832285	chr11:119789595-119957724	Enhancers Bivalent Enhancer Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
4	nsv1037777	chr11:119842515-119898368	Bivalent Enhancer Enhancers Weak transcription Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
5	nsv541179	chr11:119842515-119898368	Enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Weak transcription Active TSS Flanking Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
6	nsv1035918	chr11:119853069-119879255	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs11607987	SLC37A4	cis	brain	BrainEAC

Chromatin state (count:15 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:119846800-119858600	Weak transcription	Fetal Heart	heart
2	chr11:119854200-119862200	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
3	chr11:119854400-119859200	Weak transcription	Fetal Brain Male	brain
4	chr11:119854400-119859200	Weak transcription	Left Ventricle	heart
5	chr11:119854400-119860800	Weak transcription	Breast Myoepithelial Primary Cells	Breast
6	chr11:119854600-119859000	Weak transcription	Brain Anterior Caudate	brain
7	chr11:119854600-119859400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
8	chr11:119854600-119861800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
9	chr11:119855200-119861000	Weak transcription	Fetal Brain Female	brain
10	chr11:119855400-119859200	Weak transcription	Brain Germinal Matrix	brain
11	chr11:119855600-119859000	Weak transcription	Brain Inferior Temporal Lobe	brain
12	chr11:119856200-119859000	Weak transcription	Brain Angular Gyrus	brain
13	chr11:119856200-119859000	Weak transcription	Brain Substantia Nigra	brain
14	chr11:119856600-119858800	Weak transcription	Brain Cingulate Gyrus	brain
15	chr11:119856600-119863000	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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