Variant report

Variant	rs11608011
Chromosome Location	chr11:34195594-34195595
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:12)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:12 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr11:34194851..34196566-chr11:34380231..34381621,20	MCF-7	breast:
2	chr11:34194734..34196633-chr11:34370779..34372924,2	MCF-7	breast:
3	chr11:34192703..34198960-chr11:34377862..34381176,7	MCF-7	breast:
4	chr11:34194502..34196652-chr11:34202672..34204738,2	MCF-7	breast:
5	chr11:34189648..34198426-chr11:34377718..34382191,19	MCF-7	breast:
6	chr11:34195400..34196504-chr11:34379832..34381736,16	MCF-7	breast:
7	chr11:34194574..34196740-chr11:34221651..34224384,2	K562	blood:
8	chr11:34071760..34074563-chr11:34194562..34197437,2	MCF-7	breast:
9	chr11:34187334..34191068-chr11:34191112..34197188,7	K562	blood:
10	chr11:34195546..34196170-chr11:34215995..34216946,2	K562	blood:
11	chr11:33829510..33830030-chr11:34195544..34196521,2	K562	blood:
12	chr11:34195492..34196865-chr11:34379079..34381984,35	K562	blood:

No data

Variant related genes	Relation type
ENSG00000166016	Chromatin interaction
ENSG00000135387	Chromatin interaction

Extended variants
information (count: 5 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:4)

rs_ID	r²[population]
rs11600691	1.00[CEU][hapmap]
rs4492796	1.00[CEU][hapmap]
rs73505491	0.89[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs73507427	0.89[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv523431	chr11:34192092-34199849	Weak transcription Flanking Active TSS Enhancers Active TSS Bivalent Enhancer Strong transcription Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh	Chromatin interactive region	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:87 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:34169600-34196200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr11:34173200-34195600	Weak transcription	iPS-20b Cell Line	embryonic stem cell
3	chr11:34176800-34195600	Weak transcription	Monocytes-CD14+_RO01746	blood
4	chr11:34177000-34196200	Weak transcription	Sigmoid Colon	Sigmoid Colon
5	chr11:34177600-34196200	Weak transcription	Primary T cells from cord blood	blood
6	chr11:34177800-34195800	Weak transcription	Spleen	Spleen
7	chr11:34177800-34196000	Weak transcription	GM12878-XiMat	blood
8	chr11:34179400-34196000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
9	chr11:34182800-34196000	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
10	chr11:34183600-34198000	Weak transcription	Fetal Lung	lung
11	chr11:34184200-34195800	Weak transcription	Rectal Smooth Muscle	rectum
12	chr11:34184600-34196000	Weak transcription	Gastric	stomach
13	chr11:34188400-34196200	Weak transcription	Esophagus	oesophagus
14	chr11:34189600-34195800	Weak transcription	Thymus	Thymus
15	chr11:34190200-34195600	Weak transcription	Fetal Brain Female	brain
16	chr11:34190400-34195600	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
17	chr11:34190400-34195800	Weak transcription	Pancreas	Pancrea
18	chr11:34190600-34195800	Weak transcription	NH-A	brain
19	chr11:34190600-34196000	Weak transcription	Placenta Amnion	Placenta Amnion
20	chr11:34191800-34195800	Weak transcription	Right Ventricle	heart
21	chr11:34191800-34195800	Weak transcription	HUVEC	blood vessel
22	chr11:34192200-34195600	Weak transcription	Cortex derived primary cultured neurospheres	brain
23	chr11:34192400-34196000	Weak transcription	Left Ventricle	heart
24	chr11:34192600-34195800	Weak transcription	Primary hematopoietic stem cells short term culture	blood
25	chr11:34192600-34196000	Weak transcription	Duodenum Mucosa	Duodenum
26	chr11:34192800-34203000	Weak transcription	Aorta	Aorta
27	chr11:34193000-34195800	Weak transcription	Primary neutrophils fromperipheralblood	blood
28	chr11:34193400-34195800	Weak transcription	HSMM	muscle
29	chr11:34193400-34196000	Weak transcription	Duodenum Smooth Muscle	Duodenum
30	chr11:34193400-34196200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
31	chr11:34193600-34195800	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
32	chr11:34193800-34198400	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
33	chr11:34194600-34195600	Genic enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
34	chr11:34194600-34195800	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
35	chr11:34194600-34196000	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
36	chr11:34195000-34195800	Enhancers	Breast Myoepithelial Primary Cells	Breast
37	chr11:34195000-34195800	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
38	chr11:34195000-34195800	Bivalent Enhancer	Skeletal Muscle Male	skeletal muscle
39	chr11:34195000-34196200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
40	chr11:34195200-34195600	Enhancers	Lung	lung
41	chr11:34195200-34195800	Enhancers	Placenta	Placenta
42	chr11:34195200-34195800	Enhancers	Skeletal Muscle Female	skeletal muscle
43	chr11:34195200-34196000	Weak transcription	HepG2	liver
44	chr11:34195200-34196200	Bivalent Enhancer	Fetal Muscle Trunk	muscle
45	chr11:34195200-34196600	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
46	chr11:34195400-34195600	Flanking Active TSS	HUES6 Cell Line	embryonic stem cell
47	chr11:34195400-34195600	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
48	chr11:34195400-34195600	Enhancers	Brain Hippocampus Middle	brain
49	chr11:34195400-34195600	Flanking Active TSS	Brain Substantia Nigra	brain
50	chr11:34195400-34195600	Flanking Active TSS	Hela-S3	cervix

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