Variant report

Variant	rs116092484
Chromosome Location	chr9:71846998-71846999
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 12 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:12 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1051723	chr9:71398713-71971285	Weak transcription Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent Enhancer Enhancers Strong transcription Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	32 gene(s)	inside rSNPs	diseases
2	nsv931684	chr9:71417110-71957723	Weak transcription Flanking Active TSS Enhancers Strong transcription Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	31 gene(s)	inside rSNPs	diseases
3	nsv1049175	chr9:71418242-71986910	Weak transcription Active TSS Enhancers Strong transcription Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	31 gene(s)	inside rSNPs	diseases
4	nsv1035823	chr9:71465139-71901672	Genic enhancers Enhancers Active TSS Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Strong transcription ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	26 gene(s)	inside rSNPs	diseases
5	nsv466396	chr9:71471912-71935577	Enhancers Bivalent Enhancer Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	25 gene(s)	inside rSNPs	diseases
6	nsv614548	chr9:71471912-71935577	Enhancers Weak transcription Flanking Active TSS Genic enhancers Strong transcription Bivalent Enhancer Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	25 gene(s)	inside rSNPs	diseases
7	nsv1035477	chr9:71511927-71959487	Enhancers Strong transcription Bivalent Enhancer Active TSS Bivalent/Poised TSS Weak transcription Flanking Bivalent TSS/Enh Flanking Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	26 gene(s)	inside rSNPs	diseases
8	nsv893416	chr9:71597840-71888601	Weak transcription Enhancers Flanking Active TSS Active TSS Strong transcription Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	21 gene(s)	inside rSNPs	diseases
9	nsv817406	chr9:71675454-72179318	Weak transcription Enhancers Active TSS Flanking Active TSS Strong transcription Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	25 gene(s)	inside rSNPs	diseases
10	nsv893427	chr9:71762766-71858517	Enhancers Flanking Active TSS Weak transcription Genic enhancers Flanking Bivalent TSS/Enh Strong transcription Active TSS ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
11	nsv1049943	chr9:71834295-71855369	Strong transcription Enhancers Weak transcription Genic enhancers Flanking Active TSS	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
12	nsv831610	chr9:71846941-72016835	Flanking Bivalent TSS/Enh Weak transcription Enhancers Bivalent/Poised TSS Strong transcription Flanking Active TSS ZNF genes & repeats Active TSS Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:119 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:71828000-71866000	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
2	chr9:71828600-71856600	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
3	chr9:71828600-71857600	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
4	chr9:71828600-71865600	Strong transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
5	chr9:71828800-71851000	Weak transcription	Fetal Muscle Leg	muscle
6	chr9:71828800-71874200	Weak transcription	Muscle Satellite Cultured Cells	--
7	chr9:71831200-71851200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
8	chr9:71831400-71868000	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
9	chr9:71831400-71872800	Strong transcription	Liver	Liver
10	chr9:71831600-71863200	Weak transcription	Hela-S3	cervix
11	chr9:71833600-71850600	Weak transcription	Primary T helper cells PMA-I stimulated	--
12	chr9:71834600-71851000	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
13	chr9:71834800-71856400	Weak transcription	Primary T helper naive cells from peripheral blood	blood
14	chr9:71836400-71874000	Weak transcription	Fetal Brain Male	brain
15	chr9:71837400-71863000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
16	chr9:71838000-71847800	Weak transcription	Fetal Stomach	stomach
17	chr9:71838000-71861600	Weak transcription	Pancreatic Islets	Pancreatic Islet
18	chr9:71838600-71857600	Strong transcription	Rectal Mucosa Donor 31	rectum
19	chr9:71838600-71862200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
20	chr9:71838800-71854800	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
21	chr9:71839000-71857400	Strong transcription	HepG2	liver
22	chr9:71839000-71872600	Strong transcription	Fetal Intestine Large	intestine
23	chr9:71839600-71863400	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
24	chr9:71839800-71856600	Strong transcription	HMEC	breast
25	chr9:71839800-71857600	Strong transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
26	chr9:71839800-71857800	Strong transcription	Monocytes-CD14+_RO01746	blood
27	chr9:71839800-71858000	Strong transcription	Adipose Nuclei	Adipose
28	chr9:71840000-71857400	Strong transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
29	chr9:71840200-71847400	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
30	chr9:71840200-71847400	Strong transcription	Pancreas	Pancrea
31	chr9:71840200-71849200	Strong transcription	Primary monocytes fromperipheralblood	blood
32	chr9:71840200-71855800	Strong transcription	Breast Myoepithelial Primary Cells	Breast
33	chr9:71840200-71855800	Strong transcription	Duodenum Smooth Muscle	Duodenum
34	chr9:71840200-71856000	Strong transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
35	chr9:71840200-71856400	Strong transcription	HUVEC	blood vessel
36	chr9:71840200-71857400	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
37	chr9:71840200-71858200	Strong transcription	Stomach Smooth Muscle	stomach
38	chr9:71840200-71858600	Strong transcription	Primary neutrophils fromperipheralblood	blood
39	chr9:71840200-71870400	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
40	chr9:71840600-71847000	Strong transcription	Osteobl	bone
41	chr9:71841000-71858000	Strong transcription	Sigmoid Colon	Sigmoid Colon
42	chr9:71841400-71869800	Weak transcription	Colon Smooth Muscle	Colon
43	chr9:71841400-71869800	Weak transcription	K562	blood
44	chr9:71841800-71847400	Strong transcription	Ovary	ovary
45	chr9:71842000-71847200	Strong transcription	Lung	lung
46	chr9:71842800-71847000	Strong transcription	Small Intestine	intestine
47	chr9:71843000-71862400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
48	chr9:71843400-71847200	Weak transcription	Brain Angular Gyrus	brain
49	chr9:71843400-71850800	Weak transcription	Fetal Kidney	kidney
50	chr9:71843400-71851000	Weak transcription	Right Ventricle	heart

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