Variant report

Variant	rs11609433
Chromosome Location	chr12:40764769-40764770
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 71 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:65)

rs_ID	r²[population]
rs10459265	0.90[CHB][hapmap]
rs10467146	0.90[CHB][hapmap]
rs10467147	0.94[AFR][1000 genomes];0.94[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10735934	0.90[CHB][hapmap]
rs10748029	0.83[CHB][hapmap]
rs10784444	0.86[CHB][hapmap]
rs10784461	0.90[CHB][hapmap];0.81[CHD][hapmap];0.81[JPT][hapmap]
rs10784462	0.90[CHB][hapmap];0.82[JPT][hapmap]
rs10784470	0.85[CHB][hapmap];0.87[JPT][hapmap]
rs10784522	0.90[CHB][hapmap];1.00[JPT][hapmap];0.91[YRI][hapmap];0.87[ASN][1000 genomes]
rs10784548	0.90[CHB][hapmap]
rs10878245	0.86[CHB][hapmap];0.82[CHD][hapmap]
rs10878249	0.81[CHB][hapmap]
rs10878405	0.95[CHB][hapmap];0.87[CHD][hapmap];0.87[GIH][hapmap];1.00[JPT][hapmap];0.87[ASN][1000 genomes]
rs10878441	0.90[CHB][hapmap]
rs10878551	0.80[CEU][hapmap];1.00[JPT][hapmap]
rs10878552	0.80[CEU][hapmap];1.00[JPT][hapmap]
rs11175769	0.90[CHB][hapmap];0.82[CHD][hapmap];0.82[JPT][hapmap]
rs11175784	0.90[CHB][hapmap];0.88[JPT][hapmap]
rs11175845	0.90[CHB][hapmap];0.88[JPT][hapmap]
rs11175847	0.90[CHB][hapmap];0.85[CHD][hapmap];0.88[JPT][hapmap]
rs11175862	0.85[CHB][hapmap];0.88[JPT][hapmap]
rs11175911	0.90[CHB][hapmap];0.88[JPT][hapmap]
rs11175922	0.90[CHB][hapmap];0.88[JPT][hapmap]
rs11176013	0.82[CHB][hapmap]
rs11176030	0.90[CHB][hapmap];1.00[JPT][hapmap]
rs11176274	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11564148	0.90[CHB][hapmap];1.00[JPT][hapmap]
rs11611510	0.96[AMR][1000 genomes];0.95[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs12146857	0.85[CHB][hapmap];0.88[JPT][hapmap]
rs12311273	0.87[ASN][1000 genomes]
rs12367542	0.90[CHB][hapmap];1.00[JPT][hapmap]
rs12368227	0.82[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs12369882	0.90[CHB][hapmap];0.88[JPT][hapmap]
rs12426362	0.90[CHB][hapmap]
rs12820920	0.90[CHB][hapmap];0.85[CHD][hapmap];0.88[JPT][hapmap]
rs1491938	0.86[CHB][hapmap];0.80[CHD][hapmap]
rs17443815	0.90[CHB][hapmap];0.88[JPT][hapmap]
rs17444124	0.95[CHB][hapmap];1.00[JPT][hapmap];0.80[ASN][1000 genomes]
rs17466605	0.90[CHB][hapmap]
rs17519846	0.90[CHB][hapmap];0.88[JPT][hapmap]
rs2404580	0.86[CHB][hapmap];0.82[CHD][hapmap]
rs3761863	0.90[CHB][hapmap]
rs3886747	0.86[CHB][hapmap]
rs3952596	0.94[AMR][1000 genomes];0.95[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs4272849	0.86[CHB][hapmap]
rs4293189	0.80[CHB][hapmap];0.82[CHD][hapmap];0.82[JPT][hapmap]
rs4767973	0.90[CHB][hapmap]
rs4768230	0.90[CHB][hapmap];0.82[CHD][hapmap];0.82[GIH][hapmap];1.00[JPT][hapmap]
rs4768236	0.90[CHB][hapmap]
rs4768237	0.90[CHB][hapmap]
rs6581667	0.90[CHB][hapmap]
rs6581668	0.85[CHB][hapmap]
rs7134408	0.90[CHB][hapmap]
rs7302841	0.90[CHB][hapmap];1.00[JPT][hapmap];0.82[ASN][1000 genomes]
rs7307562	0.84[CHB][hapmap]
rs7309197	0.90[CHB][hapmap];0.88[JPT][hapmap]
rs7312118	0.97[AMR][1000 genomes];0.89[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs7955902	0.81[CHB][hapmap]
rs7956721	0.80[CEU][hapmap];0.82[GIH][hapmap];1.00[JPT][hapmap];0.80[AMR][1000 genomes]
rs7957367	0.80[CEU][hapmap]
rs7957754	0.90[CHB][hapmap];0.88[JPT][hapmap]
rs7973058	0.90[CHB][hapmap];1.00[JPT][hapmap]
rs7973479	0.90[CHB][hapmap];0.82[JPT][hapmap]
rs954884	0.86[CHB][hapmap]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1044685	chr12:40574460-40771612	Enhancers ZNF genes & repeats Bivalent/Poised TSS Active TSS Strong transcription Flanking Active TSS Weak transcription Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases
2	nsv832377	chr12:40704881-40855223	Weak transcription Enhancers ZNF genes & repeats Strong transcription Active TSS Flanking Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases
3	nsv899032	chr12:40735939-40827479	Weak transcription ZNF genes & repeats Strong transcription Enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases
4	nsv558598	chr12:40742363-40828264	Strong transcription Weak transcription Enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases
5	nsv899033	chr12:40758652-41122288	Bivalent/Poised TSS Enhancers Strong transcription Flanking Active TSS Weak transcription Transcr. at gene 5' and 3' ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	23 gene(s)	inside rSNPs	diseases
6	esv2761734	chr12:40764769-40776064	Weak transcription Enhancers Strong transcription	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:40640600-40768200	Weak transcription	Pancreas	Pancrea
2	chr12:40687200-40765000	Strong transcription	Primary neutrophils fromperipheralblood	blood
3	chr12:40726200-40766600	Weak transcription	A549	lung
4	chr12:40726200-40767800	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
5	chr12:40747800-40765000	Strong transcription	Monocytes-CD14+_RO01746	blood
6	chr12:40747800-40765200	Strong transcription	Primary monocytes fromperipheralblood	blood
7	chr12:40754800-40765600	Weak transcription	Aorta	Aorta
8	chr12:40754800-40767600	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
9	chr12:40758200-40765600	Weak transcription	Adipose Nuclei	Adipose
10	chr12:40759000-40765200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
11	chr12:40760000-40765600	Weak transcription	Duodenum Smooth Muscle	Duodenum
12	chr12:40762400-40765400	Weak transcription	Primary B cells from peripheral blood	blood
13	chr12:40764600-40769800	Weak transcription	Primary B cells from cord blood	blood

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