Variant report

Variant	rs116102829
Chromosome Location	chr6:13419793-13419794
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr6:13417839..13420815-chr6:13486813..13488730,2	MCF-7	breast:
2	chr6:13417373..13420298-chr6:13574517..13576423,2	MCF-7	breast:
3	chr6:13356302..13358883-chr6:13419456..13420974,2	K562	blood:
4	chr6:13419746..13422416-chr6:13574078..13576571,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000145990	Chromatin interaction
ENSG00000124523	Chromatin interaction

Extended variants
information (count: 4 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv532021	chr6:13232627-13805381	Active TSS Genic enhancers Strong transcription Enhancers Flanking Active TSS Weak transcription Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	74 gene(s)	inside rSNPs	diseases
2	nsv1028533	chr6:13239059-13484814	Enhancers Strong transcription Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	23 gene(s)	inside rSNPs	diseases
3	nsv538136	chr6:13239059-13484814	Strong transcription Weak transcription Enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Active TSS Genic enhancers ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	23 gene(s)	inside rSNPs	diseases
4	nsv1033620	chr6:13419730-13571788	Weak transcription Enhancers Strong transcription Flanking Active TSS Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:78 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:13405000-13421800	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
2	chr6:13408600-13422600	Weak transcription	HSMM	muscle
3	chr6:13408800-13420200	Weak transcription	Sigmoid Colon	Sigmoid Colon
4	chr6:13408800-13423000	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
5	chr6:13411400-13421800	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
6	chr6:13411600-13424200	Enhancers	Right Ventricle	heart
7	chr6:13413600-13419800	Weak transcription	Esophagus	oesophagus
8	chr6:13414000-13420000	Weak transcription	Cortex derived primary cultured neurospheres	brain
9	chr6:13414000-13421400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
10	chr6:13414000-13421800	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
11	chr6:13414000-13421800	Weak transcription	Brain Germinal Matrix	brain
12	chr6:13414000-13422000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
13	chr6:13414600-13422000	Weak transcription	NHLF	lung
14	chr6:13414800-13420200	Weak transcription	HSMMtube	muscle
15	chr6:13415000-13420000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
16	chr6:13415000-13420400	Weak transcription	Colon Smooth Muscle	Colon
17	chr6:13415200-13420200	Weak transcription	Rectal Smooth Muscle	rectum
18	chr6:13415400-13422600	Weak transcription	Gastric	stomach
19	chr6:13417200-13420400	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
20	chr6:13417200-13424200	Enhancers	Brain Angular Gyrus	brain
21	chr6:13417600-13422000	Enhancers	Brain Hippocampus Middle	brain
22	chr6:13417600-13424000	Enhancers	Brain Cingulate Gyrus	brain
23	chr6:13417800-13420400	Enhancers	Pancreas	Pancrea
24	chr6:13417800-13420800	Enhancers	Skeletal Muscle Female	skeletal muscle
25	chr6:13417800-13424000	Enhancers	Adipose Nuclei	Adipose
26	chr6:13417800-13424200	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
27	chr6:13417800-13424200	Enhancers	Left Ventricle	heart
28	chr6:13417800-13424600	Enhancers	Right Atrium	heart
29	chr6:13417800-13424800	Enhancers	Brain Inferior Temporal Lobe	brain
30	chr6:13417800-13427000	Enhancers	Psoas Muscle	Psoas
31	chr6:13418200-13420600	Strong transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
32	chr6:13418200-13421400	Weak transcription	iPS-20b Cell Line	embryonic stem cell
33	chr6:13418200-13421600	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
34	chr6:13418200-13421800	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
35	chr6:13418400-13420200	Weak transcription	H9 Cell Line	embryonic stem cell
36	chr6:13418400-13421000	Enhancers	Liver	Liver
37	chr6:13418400-13421400	Weak transcription	H1 Cell Line	embryonic stem cell
38	chr6:13418400-13421800	Weak transcription	Fetal Kidney	kidney
39	chr6:13418600-13419800	Strong transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
40	chr6:13418600-13420000	Enhancers	ES-I3 Cell Line	embryonic stem cell
41	chr6:13418600-13420400	Weak transcription	Duodenum Smooth Muscle	Duodenum
42	chr6:13418800-13420000	Enhancers	Fetal Brain Male	brain
43	chr6:13418800-13420800	Enhancers	Spleen	Spleen
44	chr6:13418800-13421800	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
45	chr6:13418800-13422600	Weak transcription	HepG2	liver
46	chr6:13418800-13422600	Enhancers	HUVEC	blood vessel
47	chr6:13418800-13422800	Enhancers	Fetal Heart	heart
48	chr6:13419000-13419800	Enhancers	Aorta	Aorta
49	chr6:13419000-13420000	Weak transcription	iPS-18 Cell Line	embryonic stem cell
50	chr6:13419000-13420000	Weak transcription	Brain Anterior Caudate	brain

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