Variant report

Variant	rs11610628
Chromosome Location	chr12:26114420-26114421
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	TCF7L2	chr12:26113640-26114691	Hela-S3	cervix:	n/a	n/a
2	MXI1	chr12:26114059-26114609	Hela-S3	cervix:	n/a	n/a
3	MXI1	chr12:26110512-26114891	SK-N-SH	brain:	n/a	n/a

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr12:26113833..26115366-chr12:26119637..26121899,2	K562	blood:
2	chr12:26112991..26115825-chr12:26120756..26122747,2	MCF-7	breast:

Variant related genes	Relation type
RASSF8-AS1	TF binding region

Extended variants
information (count: 8 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:5)

rs_ID	r²[population]
rs11609554	0.91[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs11610085	0.85[AFR][1000 genomes];0.96[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs6487520	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs7959805	0.83[AFR][1000 genomes]
rs7970591	0.87[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2758300	chr12:25992331-26161116	Enhancers Weak transcription Active TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent Enhancer Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	38 gene(s)	inside rSNPs	diseases
2	esv2759886	chr12:25992331-26161116	Enhancers Strong transcription Bivalent Enhancer Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	38 gene(s)	inside rSNPs	diseases
3	esv17456	chr12:26108846-26114910	Active TSS Flanking Active TSS Weak transcription Enhancers Flanking Bivalent TSS/Enh Strong transcription Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	24 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:79 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:26110200-26115200	Active TSS	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
2	chr12:26110800-26114600	Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
3	chr12:26112800-26116600	Weak transcription	Spleen	Spleen
4	chr12:26112800-26120600	Weak transcription	Pancreas	Pancrea
5	chr12:26113000-26114800	Enhancers	Fetal Heart	heart
6	chr12:26113000-26115200	Enhancers	Lung	lung
7	chr12:26113000-26123600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
8	chr12:26113400-26114600	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
9	chr12:26113400-26114600	Enhancers	Primary hematopoietic stem cells	blood
10	chr12:26113400-26114600	Enhancers	Cortex derived primary cultured neurospheres	brain
11	chr12:26113400-26114800	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
12	chr12:26113400-26114800	Flanking Active TSS	Breast Myoepithelial Primary Cells	Breast
13	chr12:26113400-26114800	Enhancers	Fetal Lung	lung
14	chr12:26113400-26115000	Enhancers	Aorta	Aorta
15	chr12:26113400-26115000	Enhancers	Skeletal Muscle Male	skeletal muscle
16	chr12:26113400-26115200	Enhancers	Brain Cingulate Gyrus	brain
17	chr12:26113400-26116400	Weak transcription	Esophagus	oesophagus
18	chr12:26113400-26116400	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
19	chr12:26113400-26117000	Enhancers	Brain Substantia Nigra	brain
20	chr12:26113400-26118800	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
21	chr12:26113400-26121800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
22	chr12:26113400-26123600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
23	chr12:26113400-26123600	Weak transcription	Fetal Muscle Trunk	muscle
24	chr12:26113400-26126200	Weak transcription	H9 Cell Line	embryonic stem cell
25	chr12:26113400-26128800	Weak transcription	HSMM	muscle
26	chr12:26113600-26115000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
27	chr12:26113600-26115000	Flanking Active TSS	Hela-S3	cervix
28	chr12:26113600-26115000	Flanking Active TSS	NHDF-Ad	bronchial
29	chr12:26113600-26115200	Flanking Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
30	chr12:26113600-26115200	Enhancers	Brain Angular Gyrus	brain
31	chr12:26113600-26116000	Weak transcription	Brain Inferior Temporal Lobe	brain
32	chr12:26113600-26116400	Weak transcription	Adipose Nuclei	Adipose
33	chr12:26113600-26118200	Weak transcription	HSMMtube	muscle
34	chr12:26113800-26114600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
35	chr12:26113800-26114600	Enhancers	Brain Anterior Caudate	brain
36	chr12:26113800-26114800	Weak transcription	Left Ventricle	heart
37	chr12:26113800-26115000	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
38	chr12:26113800-26115400	Enhancers	Brain Hippocampus Middle	brain
39	chr12:26113800-26115800	Weak transcription	HUES64 Cell Line	embryonic stem cell
40	chr12:26113800-26116200	Weak transcription	HUES48 Cell Line	embryonic stem cell
41	chr12:26113800-26116400	Weak transcription	HUES6 Cell Line	embryonic stem cell
42	chr12:26113800-26116400	Weak transcription	Ovary	ovary
43	chr12:26113800-26116600	Weak transcription	Fetal Stomach	stomach
44	chr12:26113800-26120600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
45	chr12:26113800-26122600	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
46	chr12:26113800-26122600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
47	chr12:26113800-26124000	Weak transcription	Fetal Intestine Large	intestine
48	chr12:26114000-26114600	Enhancers	ES-I3 Cell Line	embryonic stem cell
49	chr12:26114000-26114800	Enhancers	NHLF	lung
50	chr12:26114000-26115000	Enhancers	Skeletal Muscle Female	skeletal muscle

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