Variant report

Variant	rs11610977
Chromosome Location	chr12:118083715-118083716
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs1007112	0.85[ASN][1000 genomes]
rs1850402	0.85[ASN][1000 genomes]
rs2178580	0.85[ASN][1000 genomes]
rs41459444	0.85[ASN][1000 genomes]
rs56904629	0.94[AFR][1000 genomes];0.87[ASN][1000 genomes]
rs56951287	0.90[AFR][1000 genomes];0.95[ASN][1000 genomes]
rs61456812	0.90[AFR][1000 genomes];0.82[ASN][1000 genomes]
rs73411114	0.94[ASN][1000 genomes]
rs73411142	0.90[AFR][1000 genomes];0.99[ASN][1000 genomes]
rs73411148	0.90[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs73411182	0.90[AFR][1000 genomes];0.82[ASN][1000 genomes]
rs7953294	0.86[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832527	chr12:117974007-118110244	Weak transcription Enhancers Bivalent Enhancer ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent/Poised TSS Strong transcription	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
2	esv1573604	chr12:118083711-118083719	Enhancers Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:118076600-118089000	Weak transcription	Pancreas	Pancrea
2	chr12:118082000-118084200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
3	chr12:118083400-118085600	Enhancers	Fetal Brain Male	brain

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dbSNP/dbVar ID: rs12345 /nsv7879
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chromosomal regions: chr1:12345-34567

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