Variant report

Variant	rs11611031
Chromosome Location	chr12:45184433-45184434
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 78 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:72)

rs_ID	r²[population]
rs10748403	0.88[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10785529	0.88[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs10785530	0.88[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs10785531	0.88[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10880681	0.95[AFR][1000 genomes];0.86[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs10880682	0.81[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs10880683	0.88[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs10880684	0.88[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs10880685	0.84[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs10880686	0.88[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs10880687	0.88[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs10880688	0.88[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10880690	0.83[AMR][1000 genomes]
rs11182665	0.88[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs11182669	0.88[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11182670	0.88[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11182671	0.88[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11182672	0.88[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11182673	0.88[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11182674	0.88[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11182675	0.88[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11182676	0.88[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11182683	0.85[AFR][1000 genomes];0.94[AMR][1000 genomes]
rs11182686	0.84[AMR][1000 genomes]
rs11182688	0.83[AMR][1000 genomes]
rs11182692	0.83[AMR][1000 genomes]
rs1122351	0.98[AFR][1000 genomes];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1122352	0.88[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs1123078	0.88[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs11504486	0.88[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11532516	0.95[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11611007	0.90[AFR][1000 genomes];0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12314669	0.88[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1450544	0.82[AMR][1000 genomes]
rs1551084	0.88[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs1901147	0.87[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs2167213	0.88[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2408053	0.88[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2408055	0.88[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2408056	0.88[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4291732	0.88[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4477493	0.87[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs4768072	0.88[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs4768073	0.88[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs7134380	0.88[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs7134398	0.88[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7137623	0.88[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7137674	0.88[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs7138022	0.98[AFR][1000 genomes];0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7295947	0.85[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs7297454	0.88[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7297931	0.88[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7303297	0.88[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs7304407	0.87[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs73088920	0.83[AMR][1000 genomes]
rs7309675	0.88[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs7314804	0.87[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs7315703	0.87[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs7484938	0.85[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs7488298	0.88[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7489102	0.87[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs7952799	0.88[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7955299	0.86[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs7955528	0.86[AMR][1000 genomes];0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7957023	0.88[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7961127	0.88[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs7973551	0.88[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs7975446	0.88[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7978611	0.88[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9971707	0.88[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs9971745	0.85[AMR][1000 genomes];0.95[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs9971768	0.86[AMR][1000 genomes];0.94[EUR][1000 genomes];0.94[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3378050	chr12:44963059-45264289	Weak transcription Enhancers Strong transcription ZNF genes & repeats Flanking Active TSS Active TSS Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
2	nsv832394	chr12:45077573-45269305	Bivalent Enhancer Active TSS Flanking Active TSS Enhancers Weak transcription Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	n/a
3	nsv1049080	chr12:45097564-45195295	Weak transcription Strong transcription Enhancers ZNF genes & repeats Genic enhancers Flanking Active TSS Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	n/a
4	nsv1036926	chr12:45131884-45273648	Flanking Active TSS Enhancers Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Weak transcription Strong transcription ZNF genes & repeats Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	n/a
5	nsv541484	chr12:45131884-45273648	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	n/a
6	esv3404073	chr12:45184135-45186033	Weak transcription Enhancers ZNF genes & repeats	n/a	n/a	inside rSNPs	n/a

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:45151800-45209200	Weak transcription	Primary T killer memory cells from peripheral blood	blood
2	chr12:45153600-45185200	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
3	chr12:45157000-45205600	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
4	chr12:45168200-45189000	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
5	chr12:45173200-45210200	Weak transcription	Fetal Brain Female	brain
6	chr12:45174600-45205600	Weak transcription	Primary T cells fromperipheralblood	blood
7	chr12:45183200-45199600	Weak transcription	Primary T helper cells PMA-I stimulated	--
8	chr12:45184200-45184600	Enhancers	Primary T killer naive cells fromperipheralblood	blood
9	chr12:45184400-45184800	ZNF genes & repeats	H9 Derived Neuron Cultured Cells	ES cell derived

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