Variant report

Variant	rs11611279
Chromosome Location	chr12:12199630-12199631
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs11613729	0.83[EUR][1000 genomes]
rs11613800	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17374149	0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1797655	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2430590	0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2430591	0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2430592	0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73060058	0.83[EUR][1000 genomes]
rs73062030	0.80[EUR][1000 genomes]
rs73062031	0.84[EUR][1000 genomes]
rs73062066	0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73062071	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73062075	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv949003	chr12:11938229-12618690	Weak transcription Enhancers Strong transcription Flanking Active TSS Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	36 gene(s)	inside rSNPs	diseases
2	nsv898804	chr12:12058411-12202173	Weak transcription Enhancers Active TSS Bivalent Enhancer Strong transcription Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:12186000-12200600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
2	chr12:12199200-12209200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
3	chr12:12199400-12200600	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
4	chr12:12199400-12200600	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
5	chr12:12199400-12200800	Enhancers	GM12878-XiMat	blood
6	chr12:12199400-12201000	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
7	chr12:12199600-12199800	Enhancers	Colon Smooth Muscle	Colon
8	chr12:12199600-12200400	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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